BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39570.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891774 jgi|Araly1|891774|Al_scaffold_0007_3760 1101 0.0
> Ahg891774 jgi|Araly1|891774|Al_scaffold_0007_3760
Length=1155
Score = 1101 bits (596), Expect = 0.0
Identities = 718/773 (93%), Gaps = 23/773 (3%)
Strand=Plus/Plus
Query 437 ATCTGGCTATGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 496
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 ATCTGGATACGGTGGACAAACGGAGGTGGAGTATGGTCGGAGACCTGAGCAGAGTTATGG 464
Query 497 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 ATCTGGTTATGGTGGAAGGACGGAGACTGAATCGGAGTATGGATCTGGTGGTGGTGGAAG 524
Query 557 AACTGAGGTTGAGTATGGTAGGAGACCTGAATCAGGGCTTGGATCTGGTTATGGTGGGAG 616
||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 525 AACTGAGGTTGAGTATGGTCGGAGACCTG----A--------ATCTGGTTATGGTGGGAG 572
Query 617 ATCGGAGTCTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 676
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 ATCGGAGACTGAGTATGAGCGTAAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGG 632
Query 677 TTATAGGAAGCCTAGCTATGGAAGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAG 736
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 633 TTATAGAAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAG 692
Query 737 TTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGA 796
|||||||||||||| || || || ||||| ||||| ||||| || ||||||||||||
Sbjct 693 CTATGGAAGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCT-- 750
Query 797 GGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGA 856
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 751 -GAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGG---AAGAGGA 806
Query 857 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAGTTACATTAA 916
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 807 AGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGAGAGTTACATTAA 866
Query 917 GCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976
||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 867 GCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGG 926
Query 977 GAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGGCCGTGGCAA 1036
|||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 927 GAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGG-A--AGCCTAGCTATGGCCGTGGCAA 983
Query 1037 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGACGATGATGATGATGAGCAGCGTAGGAACCGTTCTGGTTCTGGTGATGATGAGGAAGG 1043
Query 1097 GAGCTATGGCCGCAAGAAATATGGTGGCAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1044 GAGCTATGGCCGCAAGAAATATGGTGACAATGACTCTGATGAGGATGAGGAGAAGAAGAA 1103
Query 1157 GCACCGTCACAAGCATCACCACCAGA-AGCGTCGTGACGAAGACGATGAGTAA 1208
||||||| ||||||| | |||||||| | |||||||| ||||||||||| |||
Sbjct 1104 GCACCGTTACAAGCAGCGCCACCAGAGA-CGTCGTGATGAAGACGATGACTAA 1155
Score = 610 bits (330), Expect = 1e-173
Identities = 377/400 (94%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 63 ATGCCGTACTATACCAGAGATGACA-ACGACGTCGACGATTTCGATGAGTTTGATCCAAC 121
||||||||||| |||||||| || | |||| ||||||||||| |||||||||||||||||
Sbjct 1 ATGCCGTACTACACCAGAGACGA-AGACGATGTCGACGATTTTGATGAGTTTGATCCAAC 59
Query 122 GCCGTACAGTGGTGGTTACGACATCACGGTGATCTACGGCCGTCCGATTCCACCTTCCGA 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 GCCGTACAGTGGTGGTTACGACATCACGGTGATTTACGGCCGTCCGATTCCACCTTCCGA 119
Query 182 TGAGACTTGTTATCCTCTCTCATCTGGTGTCGATGATGATTTCGAATACGAGAGACCTGA 241
|||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TGAGACTTGTCACCCTCTCTCATCTGGCGTCGATGATGATTTCGAATACGAGAGACCTGA 179
Query 242 ATTTACTCAGATCCATGAGCCTTCTGCTTACGGTGATGAAGCTCTTAACACAGAGTACAG 301
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 180 ATTTACTCAGATCCATGAACCTTCTGCTTATGGAGATGAAGCTCTTAACACAGAGTACAG 239
Query 302 TAGCTATTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGCTACTCTCGACCCAAGCCACGACCCGCATTTCGACCCGATTCAGGTGGTGGTGGTCA 299
Query 362 TGTTCAAGGTGAAAGACCAAATCCTGGTTATGGATCTGAATCCGGTTATGGGAGGAAACC 421
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 300 TGTTCAAGGCGAAAGACCAAATCCTGGTTATGGATCTGGATCCGGTTATGGGAGAAAACC 359
Query 422 GGAATCTGAGTACGGATCTGGCTATGGTGGACAAACGGAG 461
|||||| ||||| ||||| || |||||||| || ||||||
Sbjct 360 GGAATCGGAGTATGGATCCGGTTATGGTGGTCAGACGGAG 399
Score = 366 bits (198), Expect = 2e-100
Identities = 296/342 (87%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 640 AAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 699
Query 699 AGATCTGAAGAACAAGAGGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGA-GCA 757
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 700 AGATCTGAAGAACAAGAGGAAGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAA 759
Query 758 GGAAGAAGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTA 817
| | ||||| ||||| |||||||||||||||||||||||||| || ||| | ||| |||
Sbjct 760 G-AGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-G-AAG-TTA 815
Query 818 TAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAG 877
||||| ||||| ||||| || |||||||| || | ||| | | |||||| || |||||
Sbjct 816 CAGGAAACCTAGTTATGGGAGGTCTGAGGATCAGGTGGA-G-A-GTTACATTAAGCCTAG 872
Query 878 TTATGGGAGGTCTGATGATCAGGTGGA-G-A-GTTACATTAAGCCTAGCTATGGAAGATC 934
||||| |||||||| ||||||| ||| | | |||| | |||||||||||||| || ||
Sbjct 873 CTATGGAAGGTCTGAGGATCAGGAGGAAGGAAGTTATAGGAAGCCTAGCTATGGGAGGTC 932
Query 935 TGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGG 976
|||||| ||||| ||||| ||| ||||||||||||| |||||
Sbjct 933 TGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCTAGCTATGG 974
Score = 294 bits (159), Expect = 1e-78
Identities = 256/300 (85%), Gaps = 17/300 (6%)
Strand=Plus/Plus
Query 729 AAGCCAAGTTATGGAAGATCTGAGGAGCAGGAAGAAGGATATAGAAAGCCTAGCTATGGA 788
||||| || |||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 595 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTATGGA 654
Query 789 AGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAGGAA 848
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AGATCT---GAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTATGGAAGATCTGAAGAA 711
Query 849 CAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGATGATCAGGTGGAGAG- 907
||||||||||| ||| ||||| || |||||||| || ||||| || | | ||| ||
Sbjct 712 CAAGAGGAAGG---TTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGA-AGG 767
Query 908 TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCC 967
||| | ||||||||||||||||||||||||||| |||| ||| |||||||||||| ||
Sbjct 768 TTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGA--AGG-AAGTTACAGGAAACC 824
Query 968 TAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAAGCAGCCTAGCTATGG 1027
||||||||||||||||||||| |||| ||| ||||||| |||| | |||||||||
Sbjct 825 TAGTTATGGGAGGTCTGAGGATCAGGTGGAG---AGTTACATTAAGC--C-TAGCTATGG 878
Score = 226 bits (122), Expect = 4e-58
Identities = 207/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 639 AAGCCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAGGTTATAGGAAGCCTAGCTATGGA 698
||||| || |||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 730 AAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGAAGGTTATAGGAAGCCTAGCTATGGA 789
Query 699 AGATCTGAAGAACAAGA-GGAAGGTTACAGGAAGCCAAGTTATGGAAGATCTGAGGAGCA 757
|||||||| ||| | || ||||| ||||||||| || |||||||| || |||||||| ||
Sbjct 790 AGATCTGAGGAAGAGGAAGGAAG-TTACAGGAAACCTAGTTATGGGAGGTCTGAGGATCA 848
Query 758 GGAAGA-AGGATATAGAAAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGA-GGAAGGT 815
|| || || || | ||||||||||||||||| |||||||| | | || ||||| |
Sbjct 849 GGTGGAGAGT-TACATTAAGCCTAGCTATGGAAGGTCTGAGGATCAGGAGGAAGGAAG-T 906
Query 816 TATAGGAAGCCTAGCTATGGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCT 875
|||||||||||||||||||| || |||||||| || || || || ||| ||||||| |||
Sbjct 907 TATAGGAAGCCTAGCTATGGGAGGTCTGAGGAGCAGGAAGAGGGGAGTCACAGGAAGCCT 966
Query 876 AGTTATGG 883
|| |||||
Sbjct 967 AGCTATGG 974
Score = 211 bits (114), Expect = 1e-53
Identities = 211/255 (83%), Gaps = 17/255 (7%)
Strand=Plus/Plus
Query 774 AAGCCTAGCTATGGAAGATCTGAGGAGGAACAAGAGGAAGGTTATAGGAAGCCTAGCTAT 833
||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 595 AAGCCTAGCTATGGAAGGTCT---GAGGAACAAGAAGAAGGTTATAGAAAGCCTAGCTAT 651
Query 834 GGAAGATCTGAGGAACAAGAGGAAGGAAGTTACAGGAAACCTAGTTATGGGAGGTCTGAT 893
|||||||||||||||||||||||||| ||| ||||| ||||| ||||| || |||||
Sbjct 652 GGAAGATCTGAGGAACAAGAGGAAGG---TTATAGGAAGCCTAGCTATGGAAGATCTGAA 708
Query 894 GATCAGGTGGAGAG-TTACATTAAGCCTAGCTATGGAAGATCTGAGGAACAGGAGGAGGG 952
|| || | ||| || ||| | ||||| || |||||||||||||||||| | ||||| ||
Sbjct 709 GAACAAGAGGA-AGGTTATAGGAAGCCAAGTTATGGAAGATCTGAGGAAGAAGAGGAAGG 767
Query 953 AAGTTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAACAGGAAGAGGGGAGTTACAGGAA 1012
||| ||||||||||| ||||| || ||||||||| |||||| | |||||||||||
Sbjct 768 ---TTATAGGAAGCCTAGCTATGGAAGATCTGAGGAAGAGGAAG-GA--AGTTACAGGAA 821
Query 1013 GCAGCCTAGCTATGG 1027
| ||||| |||||
Sbjct 822 --A-CCTAGTTATGG 833
Score = 97.1 bits (52), Expect = 3e-19
Identities = 114/143 (80%), Gaps = 8/143 (6%)
Strand=Plus/Plus
Query 873 CCTAGTTATGGGAGGTCTGATGATC-AGGTGGAGAGTTACATTAAGCCTAGCTATGGAAG 931
||||| ||||| |||||||| || | || | || |||| | |||||||||||||||||
Sbjct 598 CCTAGCTATGGAAGGTCTGAGGAACAAGAAGAAG-GTTATAGAAAGCCTAGCTATGGAAG 656
Query 932 ATCTGAGGAACAGGAGGAGGGAAGTTACAGGAAGCCTAGTTATGGGAGGTCTGAGGAACA 991
|||||||||||| ||||| || ||| ||||||||||| ||||| || ||||| |||||
Sbjct 657 ATCTGAGGAACAAGAGGAAGG---TTATAGGAAGCCTAGCTATGGAAGATCTGAAGAACA 713
Query 992 GGAAGAGGGGAGTTACAGGAAGC 1014
|| || || ||| |||||||
Sbjct 714 AGAGGAAGG---TTATAGGAAGC 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5