BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39580.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494031 jgi|Araly1|494031|fgenesh2_kg.7__3464__AT5G39580.1 1616 0.0
Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1 547 6e-155
> Ahg494031 jgi|Araly1|494031|fgenesh2_kg.7__3464__AT5G39580.1
Length=1202
Score = 1616 bits (875), Expect = 0.0
Identities = 1005/1068 (94%), Gaps = 7/1068 (1%)
Strand=Plus/Plus
Query 1 ATGCATCTAAAACAAACTCTATCTACTAACTCGAAACACACTTGCGGTCTTATCTAAAAC 60
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 1 ATGCATCTAAAACAAACTCTATCTACTTACTCAAAACACACTTGCGATCTTATCTAAAAC 60
Query 61 ACAAACCAACaaaaagaaaaaaTGGGCTTGGTCCGA-TCATTTGCTTTGGTCATAGTCTT 119
|||||||||||||| ||||||||||| ||||||||| || |||| || | || |||||||
Sbjct 61 ACAAACCAACAAAAGGAAAAAATGGGTTTGGTCCGATTCTTTTG-TTCGTTCCTAGTCTT 119
Query 120 CCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTAC 179
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 120 CCTTAGTTGTCTCATCGCGGTTTATGGTCAAGGTACAAGGATCGGGTTCTACTCGACCAC 179
Query 180 GTGCCCTAATGCCGAGACAATTGTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCC 239
||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 ATGCCCCAATGCCGAGACGATTGTTCAGACCACTGTGGCATCTCACTTTGGTTCAGATCC 239
Query 240 AAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGA 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGGTTGCACCGGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGA 299
Query 300 TGGTTCGGTGCTTTTATCGGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCT 359
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTCAGTGCTTTTATCAGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCT 359
Query 360 CCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGT 419
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCGTGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCGGCATGTCCTGGTGT 419
Query 420 TGTCTCTTGTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGTTTCTCTCACAAACGG 479
||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| |||||
Sbjct 420 TGTCTCTTGTGCTGATATCTTAGCCTTGGCGGCTCGTGATTCCGTTGCTCTCACGAACGG 479
Query 480 ACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGT 539
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 480 ACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGACGAGTGTCCTTGGCATCGAACGT 539
Query 540 TAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 TAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCGGCGCTTT 599
Query 600 TCGCCTCAACACTCGCGATCTCGTCACTCTTGTTGGAGGAGGACACACGATCGGAACAGC 659
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 600 TCGCCTCAACACTCGCGATCTCGTCGCTCTTGTT---GGAGGACACACGATCGGAACAGC 656
Query 660 TGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAAC 719
||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 657 TGCATGTGGATTTATCACGAACAGGATATTCAACTCGACCGGAAACACAGCCGATCCAAC 716
Query 720 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 776
Query 780 AGCACGTGTTG-ATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCA 838
||| ||| ||| ||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 777 AGCGCGT-TTGGATCTTGATACGGGAAGTGGAAACACTTTTGACACATCTTATTTCAACA 835
Query 839 ATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 836 ATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCTACCA 895
Query 899 CAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAA 958
| ||| |||||||||||||||| ||| | ||| | ||||||| ||||||||||||||||
Sbjct 896 CGAGACCCATAGTGCAAGAGTTCATGACTTCTACAAGCAACTTTAATGTCCAGTTCGCAA 955
Query 959 GGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTA 1018
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 956 GTTCAATGGTTAAGATGAGTAATATTGGTGTGAAGACTGGGACAAATGGAGAAATTCGTA 1015
Query 1019 GGGTTTGCTCTGCGGTTAATTAATCAGTGATTAAGTTTTTATGGCTaa 1066
||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1016 GGGTTTGCTCTGCTGTTAATTAATCAGTGATTAAGGTTTTATGGCTAA 1063
> Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1
Length=1276
Score = 547 bits (296), Expect = 6e-155
Identities = 640/805 (80%), Gaps = 27/805 (3%)
Strand=Plus/Plus
Query 250 CCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTG 309
||||| ||||||||||||| ||| || || ||||||||||||||||| |||||| |
Sbjct 255 CCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTTGTGACGGTTCGATC 314
Query 310 CTTTTATCGGGACCTAACTCTGAAAGAACCGCTGG-CGCAAACGTTAACCTCC-ATGGTT 367
|| |||||||| ||||| | || |||||||| || | | ||| | || |||| | || |
Sbjct 315 CTGATATCGGGAGCTAACACCGAGAGAACCGCCGGTC-CGAACCTCAATCTCCGA-GGGT 372
Query 368 TTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTT 427
|||| ||||| ||| | ||||| | ||||||||| || || ||||| || ||||||||||
Sbjct 373 TTGAAGTCATCGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCAGGAGTTGTCTCTT 432
Query 428 GTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGT--TTCTCTCACAAACGG-ACAAA 484
|||||||||| || |||||||| |||||||| | || ||||| | | || || || |
Sbjct 433 GTGCTGATATTTTAGCCTTAGCCGCTCGTGACACAGTCGTTCTCACGC-AA-GGAAC-AG 489
Query 485 GTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACA 544
| |||||||| ||||| |||||||||||||| ||||||| ||||| ||||| | |||||
Sbjct 490 GATGGCAAGTACCAACGGGACGTAGAGATGGCCGAGTTTCTTTGGCTTCGAATGCTAACA 549
Query 545 ATCTTCCTTCTCCAAGTGACTCTC-TAGCCATTCAACAA-AGGAAATTCTCCGCTTTTCG 602
|||| || |||| ||||||| | | ||| |||||||| | ||||||||||||||| |
Sbjct 550 ATCTCCCCGGTCCACGTGACTC-CGTTGCCGTTCAACAACA-GAAATTCTCCGCTTTAGG 607
Query 603 CCTCAACACTCGCGATCTCGTCACT-CTTGTTGGAGGAGGACACACGATCGGAACAGCTG 661
||||| ||||| ||||||||| | || | | ||||||||||||||||||||||| |
Sbjct 608 ACTCAATACTCGTGATCTCGTC-GTCCTCG-T--CGGAGGACACACGATCGGAACAGCAG 663
Query 662 CATGTGGGTTTA-TCACGAACAGGATATTCAACTCGAGCGGA-AACACAGCAGATCCAAC 719
|||| ||| || ||| ||||||| |||||||| | | |||| ||| | |||||||||||
Sbjct 664 GATGT-GGTGTATTCAGGAACAGGCTATTCAACACCACCGGACAAC-CCGCAGATCCAAC 721
Query 720 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 779
|| |||| ||||||| | | || ||||||| || ||||||||||||||||||| ||
Sbjct 722 CATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGCTTC 781
Query 780 AGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAA 839
|| || || ||||| ||||||||||| |||| ||||| ||||| || || | || |||
Sbjct 782 AGTGCGCGTGGATCTCGACACCGGAAGCGGAACCACTTGGGACACTTCATACTACAACAA 841
Query 840 TCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGA-CTAGTCCGGCCA 898
|| |||||| | | ||| |||| ||||||||||| || ||||||| | | ||| ||||
Sbjct 842 CCTAAGCCGTGGCCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGA-TCCAGCCA 900
Query 899 CAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAA 958
| ||| ||||||||||| | || ||||| |||||| ||| |||||| || |||| || |
Sbjct 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960
Query 959 GGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGAC-GGGGACAAATGGAGAAATTCGT 1017
|||||||||| | ||||||||||| |||||| || |||| | ||||| ||||| |||
Sbjct 961 GGTCAATGGTCAGGATGAGTAATATCGGTGTGGTTACTGGGG-CTAATGGGGAAATCCGT 1019
Query 1018 AGGGTTTGCTCTGCGGTTAATTAAT 1042
|||||||||||||||||||||||||
Sbjct 1020 AGGGTTTGCTCTGCGGTTAATTAAT 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5