BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39590.1
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1 2876 0.0
> Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1
Length=1901
Score = 2876 bits (1557), Expect = 0.0
Identities = 1805/1922 (94%), Gaps = 27/1922 (1%)
Strand=Plus/Plus
Query 10 ATTTCTAATCATGGACTCCAATTTCTCTGATCATTCCCTCTAATTTCGGATTTTTGCATC 69
||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1 ATTTCCAATCATGGACTCCAATTTCTCTGATTATTCCCTCTAATTTCGAATTTTTGCATC 60
Query 70 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCTACAGACGACAAAGAATCATC 129
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 61 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCAACAGACAACAAAGAATCATC 120
Query 130 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTAAACG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTCAACG 180
Query 190 ATCCTTCTCCAAACTCGT-CGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTGAAGC 248
||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATCTTTCTCCAAACT-TTCCGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTCAAGC 239
Query 249 AAAGTTTTGGTTTGAGCTACGATACAATTACTACTGAAGGAGAG-CAAAAAGTTTCAGAC 307
||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct 240 AAAGTTTTGGTTTGAGCTACGATTCAATTACTACTGAAGGAG-GTCAAAAAGTTGGAGAC 298
Query 308 TTGTTTCCCAAATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGTTTCCCAGATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 358
Query 368 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGTGGTTATGTCAAATGTTGTGGAAGA 427
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGAGGTTATGTCAAATGTTGTGGAAGA 418
Query 428 ATGTCGAATTCGATGTCTTTCAACACTTTGTTGAGAGTTTACTATGTGACAGCTAAAAAT 487
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 ATGTCGGCTTCGATGTCTTTCAACACTTTGTTGAGAGTTTATTATGTGACAGCTAAAAAT 478
Query 488 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAGATTAACGGG 547
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAAATTAACGGG 538
Query 548 TCGATTTCGGTTAGTGAATTGCTTGTGTTTCTTTGGATGTGTTGGACAATGTCTTGGGAT 607
||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 539 TCGATTTCGATTAGAGAATTGCTTGTGTTTCTGTGGATTTGTTGGACAATGTCGTGGGAT 598
Query 608 GGTCGAAGCTCTAAAGCTGCTGAAATGAAAGGG-TGTTTGTTTCTTCCGGATATTAGTCA 666
|||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 599 GGTCGAAGTTCTAAAGCCGCTGAAATG-AAGGGTTGTTTGTTTCTTCCGGATATAAGTCA 657
Query 667 TTTGATTCTATCAGCAGTGGTGTCTTGCACTGATTCTGAATCTGGAAATAGTTTGGATGT 726
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 658 TTTGATTCTATCAGCAGTTGTGGCTTGCACTGATTCTGAATCTGGAAAGAGTTTGGATGT 717
Query 727 TTGGGAGACTGATGTTTCTGGTTTAGAACTTGAACTTCCTATCGGGAAATTCTTAACGTG 786
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 718 TTGGGAGACTGATGTTTCTGGATTAGAACTCGAACTTCCTATCGGGAAATTCTTAACGTG 777
Query 787 GGCTTTGATGACAGTTCCTTGCCTCACTGAGTGCCTTTCTCACTTTTGTAACTCGAGGCT 846
||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 778 GGCGTTGATGACAGTGCCTAGCCTCACTGAGTGCCTTTCTCACTTTTGTAATTCGAGACT 837
Query 847 TCAAAATGTGACAAGTGCAGAGGATGGATCTGGACCTTCAAAGTCCACTGCTGTAGATGA 906
||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 838 TCAAAATTTGACAAGTGTTGAGGATGGTTCTGGACCTTCGAAGTCCACTGCTGTAGATGA 897
Query 907 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCGATTTC 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCAATTTC 957
Query 967 TTTGACGAGCAAAAGTACAATAAGCGAGGAGATTTTGAGCTCATGTTTTCCCGGCAATAG 1026
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 958 TTTGACGAGCAAAAGTATAATAAGCGAGGAGATTTTGAGCTCATGCTTTCCCTGCAATAG 1017
Query 1027 CGGTG-AACCAAATGAACATCTTCTATACCGCTCATATTATCACGGGAAAGGCATGAATC 1085
| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 CAATGAAACC-AATGAACATCTTCTATACCGCTCATACCATCACGGGAAAGGCATGAATC 1076
Query 1086 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTT 1145
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1077 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCGATACTAGTGATAATTTCTGCAAGCT 1136
Query 1146 GTAAAGTCGAACATGAGGCTACTTCAAGCGAGAGGAAGTGGGTCATTGGTGCAATCTTGC 1205
|| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1137 GTGAAGTCGAACATGAGGGTACTTCAAGCAAGAGGAAGTGGGTTATTGGTGCAATCTTGC 1196
Query 1206 AGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAA 1265
|||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 1197 AGCATGGTTTTGAAAACAGGGACGCATTTTATGGAAGCTCTGGGAATTTGTTCTCCATTA 1256
Query 1266 GTCCAGTCTTTCACGCATTCTCATCTTCTGGTAAGGAGAAAAACTTTGCGTATAGCCATC 1325
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1257 GTCCAGTCTTTCACGCATTCTCATCTTCTGGCAAGGAGAAAAACTTTGCGTATAGCCATC 1316
Query 1326 TGCA-CCCTGCTGGCGGAGTGTACGACGCACATCCCAAGCCTGTTGGAATTGGATTCGGG 1384
|||| |||| |||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1317 TGCATCCCT-CTGGTGGAGTCTACGACGCACGCCCCAAGCCTGTTGGAATTGGATTCGGG 1375
Query 1385 GGAACACTTGGAAATGAGAGAATTTTCATTGATGAAGACTTTGCTAAAATCACAGTCCGT 1444
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1376 GGAACACTTGGAAACGAGAGAATTTTCATTGGTGAAGACTTTGCTAAAATCACAGTCCGT 1435
Query 1445 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1495
Query 1505 CCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGG 1564
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1496 CCAGTAGAGGCTTTGGTTTTAGATATTGAAGCATGGGGGTTAGGTGGAAATAAGGCTAGG 1555
Query 1565 GAAATTCAACAAAAATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1624
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GAAATTCAACAAGCATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1615
Query 1625 GACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1684
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GACTTGAAAACATTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1675
Query 1685 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAATGAAAGACGAGAACTGGTTT 1744
|||||||||||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 1676 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAA-------CGA-A---G-TTT 1723
Query 1745 GATATATACACACATATACGTTGTTGTCTCTTAAAATATATATGCAAGAAACTCTTTTGC 1804
|||||||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| |||
Sbjct 1724 GATATATATACACACATACGTTTTTGTCTGT-AAAATATATAAGCAAGAAACTCTTCTGC 1782
Query 1805 TGTTCATG-AGCTCTTGGATTCAATGTGTAAGTTATGTATACTAGTGTTGCCAAAACTTG 1863
| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 1783 TATTTATGTA-CTCGTGGATTCAATGTGTAAGTTATGTATACTATTGTTGCCCAAACTCG 1841
Query 1864 AACCAGCCAGTTGATTTGATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAA 1923
|||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct 1842 AACCGGCCTGTTGATT--ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCA 1899
Query 1924 TA 1925
||
Sbjct 1900 TA 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72980909420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5