BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39600.1

Length=781
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947855 jgi|Araly1|947855|scaffold_704084.1                        665    0.0  
  Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1        65.8    5e-10


> Ahg947855 jgi|Araly1|947855|scaffold_704084.1
Length=424

 Score =  665 bits (360),  Expect = 0.0
 Identities = 396/414 (96%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  119  GTGTTTGATATCTAAAGAAGATGTTGAAGTTTCTATCAAAAGTAAGAATTGAGTTCAACA  178
            |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  1    GTGTTTGATATCGAAAGAAGATGTTGAAGTTTCTATCAAAAGTAAGAGTTGAGTACAACA  60

Query  179  CATTAGATCCAAGACTTGCGTCTTGTGTTGAATTCTTAGCTCAATGCAATGCAAGGAAGG  238
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CATTGGATCCAAGACTTGCGTCTTGTGTTGAATTCTTAGCTCAATGCAATGCAAGGAAGG  120

Query  239  CCAAAGAATCGAATCCCAATTGTCAGGTTTTGGTGAAACGTAGAACCGATGAGCAGCCGC  298
            ||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  121  CCAAAGAGTCGAATCCAAATTGTCAGGTTTTGGTGAAACGTAGAACTGATGAACAGCCGC  180

Query  299  CGCAGATCACTGTCACTTTTGTTAATGGTGTTGAGGAAGCTTTTGATGCAGCTGCAACCT  358
            ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  181  CGCAGATTACTGTCACGTTTGTTAATGGTGTTGAGGAAGCTTTTGATGCAGCTGCAACAT  240

Query  359  CGGCTCAGTCGATTAGAAAGATGATTCTTGATAAAGGTCAGTATCTTGAGACAGAGCAAA  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGGCTCAGTCGATTAGAAAGATGATTCTTGATAAAGGTCAGTATCTTGAGACAGAGCAAA  300

Query  419  TGTTTCGTGAAGCTGGAGAACAATGGCCTGTGATTATCCCTGATGAAGAACTTCTCCAAG  478
            |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TGTTCCGTGAAGCCGGTGAACAATGGCCTGTGATTATCCCTGATGAAGAACTTCTCCAAG  360

Query  479  AGGCTCCTGGTGTTAAGCCGAGAAAAGCAGAAGACAAGAAGTGATGCTGCACCA  532
            ||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||
Sbjct  361  AGGCTCCTGGTGTGAAGCCGAGAAAAGCAGAGGACAAGAAGTAATGCTGCGCCA  414


> Ahg494030 jgi|Araly1|494030|fgenesh2_kg.7__3463__AT5G39590.1
Length=1901

 Score = 65.8 bits (35),  Expect = 5e-10
 Identities = 41/44 (93%), Gaps = 0/44 (0%)
 Strand=Plus/Minus

Query  737   TATTGAAGCTCTGGGAATAAAAACCAATTTTTATAGGCAAATAT  780
             ||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct  1901  TATGGAAGCTCTGGGAATAAAAACCAATTTTTATGGGCAGATAT  1858



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28820925252


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5