BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39610.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494028 jgi|Araly1|494028|fgenesh2_kg.7__3461__AT5G39610.1 1637 0.0
Ahg484673 jgi|Araly1|484673|fgenesh2_kg.5__665__AT3G29035.1 534 5e-151
> Ahg494028 jgi|Araly1|494028|fgenesh2_kg.7__3461__AT5G39610.1
Length=1151
Score = 1637 bits (886), Expect = 0.0
Identities = 1033/1099 (94%), Gaps = 29/1099 (3%)
Strand=Plus/Plus
Query 93 aaAAATCTTACAAGAAGATC---ATTTTTAGAAACCCTATTAGGATAAAATGGATTACGA 149
|||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 61 AAAATTCTTACAAGAAGATCAAAACTTTTAGAAACCCTATTAGGATAAAATGGATTATGA 120
Query 150 GGCATCAAGAATCGT-CGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGAT 208
||||||||||||| | ||||||||| |||||||| ||||| || ||||||||||||||||
Sbjct 121 GGCATCAAGAATC-TGCGAAATGGTTGAAGATGATGAACAAATTGATCTACCACCAGGAT 179
Query 209 TCAGATTTCACCCTACTGATGAAGAACTCATAACTCACTACCTCAAACCAAAGGTTTTCA 268
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TCAGATTTCACCCTACTGATGAAGAACTCATAACTCACTACCTCAAACCAAAAGTTTTCA 239
Query 269 ACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGG 328
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 ACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATCGAGCCTTGGG 299
Query 329 ACTTACCATGGAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACC 388
||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct 300 ACTTACCATGGAAGGCTAAGATGGGTGAGAAAGAATGGTATTTCTTTTGTGTAAGAGACC 359
Query 389 GGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTATTGGAAAGCCA 448
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGAAATACCCAACCGGTTTGAGGACAAACCGGGCGACAGAAGCCGGTTATTGGAAAGCCA 419
Query 449 CAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGG 508
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGGTAAAGACAAAGAGATTTTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGG 479
Query 509 TTTTCTATAAAGGAAGAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTTCTATAAAGGAAGAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATC 539
Query 569 GTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTA 628
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTAGAAGGCAAATATTCTATCGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTA 599
Query 629 TATGTCGTGTTTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATC 688
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATGTCGTGCTTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATC 659
Query 689 CACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGTTCTCAACGAG 748
|||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 660 CACACATTAACCGAATTGAACCAACCGGTTTACCTTCGTTGATGGATTGTTCTCAACGAG 719
Query 749 ACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACA 779
Query 809 AAAGACTTGTCCACGAGTCCAAAG-ACGGTTTTGGTTCTCTGTTTTACTCGGATCCTCTG 867
| ||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 780 AGAGACTTGTCCAGGAGTCCAAAGGA-GGTTTTGGTTCTCTGTTTTACTCTGATCCTCTG 838
Query 868 TTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTC 927
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAACCTCAATT- 897
Query 928 TCC-GGCAAA-CCTTTCGACGGTCGTGAT---TC-G-T----CCGGTACAGAAGAATTGG 976
||| || | | ||||| |||||||||||| || | | ||||||||||||||||||
Sbjct 898 TCCCGGTAGATCCTTT-GACGGTCGTGATCCGTCCGGTTTGGCCGGTACAGAAGAATTGG 956
Query 977 ATTGCGTTTGGAATTTCTGAGTTGTATAAGTTATGTTGTAGACTTGTAGTAGTCATGTGT 1036
||||||||||||||||||||||||||||| || ||||||||| || | ||||||||||||
Sbjct 957 ATTGCGTTTGGAATTTCTGAGTTGTATAACTTCTGTTGTAGA-TT-T-GTAGTCATGTGT 1013
Query 1037 TCGTGTGTGTGAATGAATATTCTTGTTACAtttttttGTaaaaaa----ggagaaaaaaa 1092
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1014 TCGTGTGTGTGAATGAATATTCTTGTTACATTTTTT-GTAAAAAAAAAAGGAGAAAAAAA 1072
Query 1093 TATGCTAGAAAGTCAATTGCTTTTGTTATGTAGCATTAGTGTTTTTTATGT-ACTCAATA 1151
|||||||||||||||||||||||||||||||||||||||| |||||||| | | | ||||
Sbjct 1073 TATGCTAGAAAGTCAATTGCTTTTGTTATGTAGCATTAGTTTTTTTTATTTTATTTAATA 1132
Query 1152 GACTTCCTAATTAAATAAA 1170
||||||| |||||| ||||
Sbjct 1133 GACTTCCAAATTAATTAAA 1151
> Ahg484673 jgi|Araly1|484673|fgenesh2_kg.5__665__AT3G29035.1
Length=1141
Score = 534 bits (289), Expect = 5e-151
Identities = 438/507 (86%), Gaps = 22/507 (4%)
Strand=Plus/Plus
Query 172 GTAGAAGA-TGA-AGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATG 229
|||||||| | | |||| || | ||| | ||||| || |||||||||||||| |||||||
Sbjct 110 GTAGAAGATTCAGAGAAGAT-T-GATTTGCCACCTGGTTTCAGATTTCACCCAACTGATG 167
Query 230 AAGAACTCATAACTCACTACCTCAA-ACCAAAGGTTTTCAACACTTTCTTCTCTGCTACT 288
||||||| ||||||||||| || || |||||||||| | |||||||| || ||||||| |
Sbjct 168 AAGAACTTATAACTCACTATCT-AAGACCAAAGGTTCTAAACACTTTTTTTTCTGCTA-T 225
Query 289 -GCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATGGAAGGCTAA 347
|| |||||||||||||||||||||||| | ||||| |||||||| || |||||||||||
Sbjct 226 AGCTATTGGTGAAGTTGATCTCAACAAGGTCGAGCCATGGGACTTGCCTTGGAAGGCTAA 285
Query 348 GAT-GGGAGAAAAAGAATGGTATTTCTTCTGTGTGA-GAGACCGGAAATACCCGACCGGT 405
||| ||| |||||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct 286 GATAGGG-GAAAAAGAGTGGTACTTCTTTTGCGT-ACGAGACCGGAAATACCCGACCGGT 343
Query 406 TTAAGGACAAACCGGGCGAC-AGAAGCCGGTTATTGGAAAGCCACAGGAAAAGACAAAGA 464
|||||||| || ||||| || | ||||||||||||||||||| ||||| ||||| |||||
Sbjct 344 TTAAGGACGAATCGGGCTACTA-AAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGA 402
Query 465 GATATTCAA-GGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAA 523
||| ||||| |||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct 403 GATCTTCAAAGGGAAA-TCTCTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAA 461
Query 524 GAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAAT 583
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 462 GAGCTCCTAAAGGAGTAAAAACCAATTGGGTCATGCATGAATATCGCTTAGAAGGCAAAT 521
Query 584 ATTGT-ATTGAAAATCTTCCCCAAA-CAGCTAAGAACGAATGGGTTAT-ATGTCGTGTTT 640
|| | || || ||||| ||| ||| | |||||||||||||| ||||| | |||||||||
Sbjct 522 AT-GCCATCGATAATCT-CCCTAAAACCGCTAAGAACGAATGTGTTATTA-GTCGTGTTT 578
Query 641 TCCAAAAACGTGCCGATGGTACAAAGG 667
| || ||||| || |||||||| ||||
Sbjct 579 TTCATAAACGGGCAGATGGTACGAAGG 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5