BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39620.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891768 jgi|Araly1|891768|Al_scaffold_0007_3754                    318    3e-86
  Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1        56.5    2e-07


> Ahg891768 jgi|Araly1|891768|Al_scaffold_0007_3754
Length=669

 Score =  318 bits (172),  Expect = 3e-86
 Identities = 435/556 (78%), Gaps = 41/556 (7%)
 Strand=Plus/Plus

Query  4    GAAAA-AACAAAGCTTAAGATCATTCTCCTCGGCGATAGCGGGGTAGGCAAAACATCACT  62
            ||||| ||||||||| |||||||| || |||||  ||||||||||||||||||||||| |
Sbjct  114  GAAAAGAACAAAGCTGAAGATCATCCTTCTCGGAAATAGCGGGGTAGGCAAAACATCATT  173

Query  63   GTTGAAGCGATACAATGACAAGGATTTTAAGCA-GCTACATAAT-TCTACAAT---ATAT  117
            |  ||| ||||||| ||   |||| |||||| | ||| ||| ||   |||| |   | ||
Sbjct  174  GACGAAACGATACATTGGTGAGGAATTTAAG-AGGCTGCAT-ATGAATACAGTCGGA-AT  230

Query  118  GTAGATTT-AGTCACCAAGGAGATTTGTATCGCAGAAAG-ACAAGTCATTTTACAAATTT  175
            |  ||||| |  || ||||||| ||||  | | | |||| |||||||| |||||||||||
Sbjct  231  G--GATTTCA-CCAACAAGGAGCTTTGCGTTG-ACAAAGAACAAGTCACTTTACAAATTT  286

Query  176  GGGATACTGCTGGACAAGAAAGATTTAAAAGTTTACCATCACGATTCTACCGAGACACAG  235
            |||||||||||||||||||||||||| | ||| || | ||| | ||||| |||||| || 
Sbjct  287  GGGATACTGCTGGACAAGAAAGATTTCACAGTATAACGTCAGGGTTCTATCGAGACGCAA  346

Query  236  ATTGTTGTGTTCTCGTCTATGACGTGAATACTCTTAAAACCTTTGAATCTATCGACAACT  295
            |||| || ||||| || || ||||| |||| |||  || | ||||||||| |||||| ||
Sbjct  347  ATTGCTGCGTTCTTGTATACGACGTTAATATTCTCGAATCGTTTGAATCTCTCGACATCT  406

Query  296  GGCACGACGAGTTTATCAAACAGGCAAATCCTGAG-ACACCT-ACCAAGTTTCC--TT--  349
            |||| | | ||||  || || ||||| ||||| |  |||||| || |||||||   ||  
Sbjct  407  GGCATGCCCAGTTCGTCGAAGAGGCAGATCCT-ATCACACCTGAC-AAGTTTCGAATTCC  464

Query  350  -TT-GTTTTGATGGGCAACAAAACTGATGTAAACAATGG-A-AA-A-CCCCGAGTTGTTG  403
             || ||||||||||| |||||||| |||||||| |  || | || | |||| ||||||||
Sbjct  465  CTTTGTTTTGATGGGGAACAAAACAGATGTAAA-A--GGCAGAACATCCCC-AGTTGTTG  520

Query  404  CAAAGGAGATAGCTGACCAATGGTGTG-GATCAAAGGGG-AATATAGTATACTTTGAGAC  461
             ||| |||| ||| | ||||||||||| || |||||||| || ||||  |||||||||||
Sbjct  521  AAAAAGAGAAAGCAGTCCAATGGTGTGAGA-CAAAGGGGGAA-ATAGCCTACTTTGAGAC  578

Query  462  TTCAGCAAAGGCAAAA-ATCAATGTTGAAGAAGCTTTTCTGGAGATAGC-CAAAAAGGCT  519
             || ||||||| |||| | ||||||||| ||||||||| ||||| | || | ||||| ||
Sbjct  579  CTCGGCAAAGG-AAAAGAGCAATGTTGATGAAGCTTTTATGGAGGTTGCTCGAAAAG-CT  636

Query  520  CTCACAAATGAGCGTC  535
            |||  | ||| |||||
Sbjct  637  CTCTTATATGTGCGTC  652


> Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1
Length=979

 Score = 56.5 bits (30),  Expect = 2e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  172  ATTTGGGATACTGCTGGACAAGAAAGATTT  201
            ||||||||||||||||||||||||||||||
Sbjct  350  ATTTGGGATACTGCTGGACAAGAAAGATTT  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5