BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39630.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891767 jgi|Araly1|891767|Al_scaffold_0007_3753 822 0.0
> Ahg891767 jgi|Araly1|891767|Al_scaffold_0007_3753
Length=633
Score = 822 bits (445), Expect = 0.0
Identities = 548/597 (92%), Gaps = 9/597 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAATGTGTTCCACGAATACGATCAGCAATATAGCGAGCTCTCCA-TAAATCTTTC 59
|||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct 1 ATGAGTAATGTGTTCCACGAATACGATCGGCAATATAGAGAGCTCT-CAGTAAATCTTTC 59
Query 60 AAAGAAGTGTTCCTTGGCTTTTTCTCTCAAAGGAGGAGAGAAGAAGGAGAAGCTGTCCGA 119
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 60 AAAGAAGTGTTACTTGGCTTTTTCACTCAAAGGAGGAGAGAAGAAGGAGAAGCTGGCTGA 119
Query 120 AATAACATATGATCTGGAAAATGCAGAAAAATTGATTTCGAAAATGGATCATGCAGCAAG 179
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AATAACATCTGATCTGGAAAATGCAGAAAAATTGATTTGGAAAATGGATCATGCAGCAAG 179
Query 180 TAACCTTCCACCCAATATCAAATCCATCCTTCTTGAAAAATTAAAGGAATCCAAATCGAG 239
|||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct 180 TAACCTTCCACCCAATATTAAATCCATCCTCCTTGAAAAATTAAGGGAATCTAAATCTAG 239
Query 240 TCTAAAAAGA-TTGAGAAATGAAATCAAGAGGAACACATCTGAAAACTTGAAAGTTACTA 298
|||||||||| || || | ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 240 TCTAAAAAGATTTAAG-AGTGATATCAAGAGGAACACATCTGAAAACTTGAATGTTACTA 298
Query 299 CTCGAGAAGAAGTTCTTGAAGCTGAAAAGGCGGATTTAGCTGATCAAAGATCAAGATTGA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CTCGAGAAGAAGTTCTTGAAGCTGAAAAGGCGGATTCAGCTGATCAAAGATCAAGATTGA 358
Query 359 TGAAATCAACCGAGGGTTTGGTTCGAACTAGAGAGATGATTAAGGACAGTCAAAGAAAAC 418
||||||||||||||||||||| |||||| |||||||| |||||| | |||| |||||||
Sbjct 359 TGAAATCAACCGAGGGTTTGGCTCGAACAAGAGAGATAATTAAGCAGAGTCGAAGAAAAA 418
Query 419 TGCTGGAGACTGAAAATATTGGTATTTCAATACTCGAGAACTTGCAAAGGCAGAAAGAGT 478
|| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 TGATGGAGACCGAAAACATTGGTATTTCAATACTCGAGAACTTGCAAAGTCAGAAAGAGT 478
Query 479 CTCTCCAAAACAGCCAAGCTATGCTTCATGAGATAGATGATACTGTCAAAGAGAGCCGGT 538
|||||||| ||||||| |||||||||||||||||||||| | |||||||||| ||| ||
Sbjct 479 CTCTCCAACGCAGCCAATCTATGCTTCATGAGATAGATGACAATGTCAAAGAGTGCCAGT 538
Query 539 CAATCGTGAGAAGCATAAAGATCAAGGAATTTTTTAC--TG--TGACTGCACCAATT 591
|||| |||| || ||| |||||||||||||||||||| || || |||||||||||
Sbjct 539 CAATAGTGACAACCATTAAGATCAAGGAATTTTTTACAATGGCTG-CTGCACCAATT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5