BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39650.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1 1260 0.0
Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1 436 1e-121
> Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1
Length=871
Score = 1260 bits (682), Expect = 0.0
Identities = 758/795 (95%), Gaps = 4/795 (1%)
Strand=Plus/Plus
Query 16 ACg-aaaaactggtaaatcacaaaagaaaaaa-acagagagaaacacacgaaaatggaga 73
||| |||||||| | |||||||||| |||||| | |||||||||||||| ||||||||||
Sbjct 1 ACGAAAAAACTGTTTAATCACAAAA-AAAAAATA-AGAGAGAAACACACAAAAATGGAGA 58
Query 74 aaacagaggaaaGCGTCGGAATCAGAGTTTACACGGCGACTCCGCCGCAAAAACCATCAC 133
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 AAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTACGCCGCAAAAACCATCAC 118
Query 134 CATCACCACCTTCTCGTTCACCAAAACCCGTCTTAATCTCTTCATTGCCTTCCCTCCCGT 193
|||||||||| ||||| |||||||||||||||| |||||||||| ||||| | || |||
Sbjct 119 CATCACCACCGTCTCGCTCACCAAAACCCGTCTCAATCTCTTCACTGCCTACACTTCCGG 178
Query 194 CAGGAGCCGCCGCTGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTGGCGCAAGGAGTTC 253
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CAGGAGCCGCCGCCGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTAGCGCAAGGAGTTC 238
Query 254 AAAAAACGGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACACTCTTGA 313
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 AAAAAACAGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACTCTCTTGA 298
Query 314 TGTTCGAAATGGTTCTTCCATCAATATACCGTGACGGAGACTGTAACGGAATCAACACAC 373
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTCGAAATGGTTCTTCCATCAATCTACCGTGACGGAGACTGTAACGGAATCAACACAC 358
Query 374 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTTACCG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTCACCG 418
Query 434 ACAGTTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCG 493
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 ACAGTTTCAAAGCCTCAGATGGGAAAATCTACTACGGTTTCGTGACGCCACGTGGACTCG 478
Query 494 CGGTGTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAG 553
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |
Sbjct 479 CGGTGTTCATGAAACCGCCGCCTCCGGAGTTTGGAGGCGGAGATGTGATAGCGGAAGCGG 538
Query 554 AGATTCCGGTGACTGATGATAGGTATAAGTTGACGGTTAATGACTTTGTTCATGCAGTGA 613
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 AGATTCCGGTGACTGATGAGAGGTATAAGTTGAAGGTTAATGACTTTGTTCATGCAGTGA 598
Query 614 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACGGGATGTTTGT 673
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACTGGATGTTTGT 658
Query 674 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 718
Query 734 TTGTTTGTAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATATGGTGTTGGTTGCATGA 793
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATACGGTGTTGGTTGCATGA 778
Query 794 CTGGTTAatttattt 808
|||||| ||| ||||
Sbjct 779 CTGGTTGATTAATTT 793
> Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1
Length=589
Score = 436 bits (236), Expect = 1e-121
Identities = 299/329 (91%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 438 TTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCGCGGT 497
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 231 TTTCAAAGCCTCCGATGGGAAAATCTACTACGGTTTCGTGACTCCACGTGGACTCGCGGT 290
Query 498 GTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAGAGAT 557
||||||||||||||| | || |||||||| || |||||||| || | |||||| |||||
Sbjct 291 GTTCATGAAACCGCCTTCGCCGGAGTTTGGAGGGGGAGATGTGATTGAGGAGGCGGAGAT 350
Query 558 TCCGGTGACTGATGATAGGTATAAGTTGAC-GGTTAATGACTTTGTTCATGCAGTGATGA 616
||||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 351 TCCGGTGACGGATGAGAGGTATAAGTTG-CGGGTTAATGACTTTGTGCATGCAGTGATGA 409
Query 617 GCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCA-CGGGATGTTTGTTT 675
| |||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 410 GTGTTTTGGTTTTTATGGCGATTGCGTTTTCGGATCGGAGAGTCACCGGG-TGTTTGTTT 468
Query 676 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAATT 735
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 469 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGATCGGAATT 528
Query 736 GTTTGTAGTGCTTTGTTTCT-T-GTTTTT 762
||||| |||||||||||||| | ||||||
Sbjct 529 GTTTGCAGTGCTTTGTTTCTGTTGTTTTT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5