BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39650.1 Length=918 Score E Sequences producing significant alignments: (Bits) Value Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1 1260 0.0 Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1 436 1e-121 > Ahg494025 jgi|Araly1|494025|fgenesh2_kg.7__3458__AT5G39650.1 Length=871 Score = 1260 bits (682), Expect = 0.0 Identities = 758/795 (95%), Gaps = 4/795 (1%) Strand=Plus/Plus Query 16 ACg-aaaaactggtaaatcacaaaagaaaaaa-acagagagaaacacacgaaaatggaga 73 ||| |||||||| | |||||||||| |||||| | |||||||||||||| |||||||||| Sbjct 1 ACGAAAAAACTGTTTAATCACAAAA-AAAAAATA-AGAGAGAAACACACAAAAATGGAGA 58 Query 74 aaacagaggaaaGCGTCGGAATCAGAGTTTACACGGCGACTCCGCCGCAAAAACCATCAC 133 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 59 AAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTACGCCGCAAAAACCATCAC 118 Query 134 CATCACCACCTTCTCGTTCACCAAAACCCGTCTTAATCTCTTCATTGCCTTCCCTCCCGT 193 |||||||||| ||||| |||||||||||||||| |||||||||| ||||| | || ||| Sbjct 119 CATCACCACCGTCTCGCTCACCAAAACCCGTCTCAATCTCTTCACTGCCTACACTTCCGG 178 Query 194 CAGGAGCCGCCGCTGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTGGCGCAAGGAGTTC 253 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 179 CAGGAGCCGCCGCCGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTAGCGCAAGGAGTTC 238 Query 254 AAAAAACGGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACACTCTTGA 313 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 239 AAAAAACAGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACTCTCTTGA 298 Query 314 TGTTCGAAATGGTTCTTCCATCAATATACCGTGACGGAGACTGTAACGGAATCAACACAC 373 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 299 TGTTCGAAATGGTTCTTCCATCAATCTACCGTGACGGAGACTGTAACGGAATCAACACAC 358 Query 374 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTTACCG 433 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 359 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTCACCG 418 Query 434 ACAGTTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCG 493 ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 419 ACAGTTTCAAAGCCTCAGATGGGAAAATCTACTACGGTTTCGTGACGCCACGTGGACTCG 478 Query 494 CGGTGTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAG 553 ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || | Sbjct 479 CGGTGTTCATGAAACCGCCGCCTCCGGAGTTTGGAGGCGGAGATGTGATAGCGGAAGCGG 538 Query 554 AGATTCCGGTGACTGATGATAGGTATAAGTTGACGGTTAATGACTTTGTTCATGCAGTGA 613 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 539 AGATTCCGGTGACTGATGAGAGGTATAAGTTGAAGGTTAATGACTTTGTTCATGCAGTGA 598 Query 614 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACGGGATGTTTGT 673 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 599 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACTGGATGTTTGT 658 Query 674 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 718 Query 734 TTGTTTGTAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATATGGTGTTGGTTGCATGA 793 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 719 TTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATACGGTGTTGGTTGCATGA 778 Query 794 CTGGTTAatttattt 808 |||||| ||| |||| Sbjct 779 CTGGTTGATTAATTT 793 > Ahg470999 jgi|Araly1|470999|fgenesh2_kg.1__953__AT5G39650.1 Length=589 Score = 436 bits (236), Expect = 1e-121 Identities = 299/329 (91%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 438 TTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCGCGGT 497 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 231 TTTCAAAGCCTCCGATGGGAAAATCTACTACGGTTTCGTGACTCCACGTGGACTCGCGGT 290 Query 498 GTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAGAGAT 557 ||||||||||||||| | || |||||||| || |||||||| || | |||||| ||||| Sbjct 291 GTTCATGAAACCGCCTTCGCCGGAGTTTGGAGGGGGAGATGTGATTGAGGAGGCGGAGAT 350 Query 558 TCCGGTGACTGATGATAGGTATAAGTTGAC-GGTTAATGACTTTGTTCATGCAGTGATGA 616 ||||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||||| Sbjct 351 TCCGGTGACGGATGAGAGGTATAAGTTG-CGGGTTAATGACTTTGTGCATGCAGTGATGA 409 Query 617 GCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCA-CGGGATGTTTGTTT 675 | |||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||| Sbjct 410 GTGTTTTGGTTTTTATGGCGATTGCGTTTTCGGATCGGAGAGTCACCGGG-TGTTTGTTT 468 Query 676 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAATT 735 |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct 469 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGATCGGAATT 528 Query 736 GTTTGTAGTGCTTTGTTTCT-T-GTTTTT 762 ||||| |||||||||||||| | |||||| Sbjct 529 GTTTGCAGTGCTTTGTTTCTGTTGTTTTT 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34043764881 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5