BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39680.1
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494022 jgi|Araly1|494022|fgenesh2_kg.7__3455__AT5G39680.1 3321 0.0
Ahg947406 jgi|Araly1|947406|scaffold_703635.1 60.2 7e-08
> Ahg494022 jgi|Araly1|494022|fgenesh2_kg.7__3455__AT5G39680.1
Length=2317
Score = 3321 bits (1798), Expect = 0.0
Identities = 2030/2145 (95%), Gaps = 4/2145 (0%)
Strand=Plus/Plus
Query 12 TTTGGCGCCATGTCAGCCTTGTCTGTGATCGAACAACGATTGTTAAAGTGGGACAAGCTC 71
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTTGGCGCCATGTCAGCCTTGTCTGTGATCGAACAACGATTGCTAAAGTGGGACAAGCTC 60
Query 72 GCGTCTTTAGTACCCAAATCaaaaaaaaCTCCT-TTTCCGATTGATCGTCTAAACGAGCT 130
|||||||||||||||||| |||| ||| || || ||||||||||||||||| ||||||||
Sbjct 61 GCGTCTTTAGTACCCAAACCAAAGAAACCT-CTGTTTCCGATTGATCGTCTTAACGAGCT 119
Query 131 TTTGAAAGTCTGTGCTAATTCAAGTTATCTAAGAATTGGAGAATCGATTCACGCTCATTT 190
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 120 TTTGAAAGTCTGTGCTAATTCAAGTTATCTAAGAACTGGAGAATCGATTCACGGTCATTT 179
Query 191 GATTGTTACCAACCAATCATCTAGAGCTGAAGACGCGTATCAGATCAATTCTCTGATCAA 250
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||
Sbjct 180 GATTGTTACCAACCAATCATCTAGAGCTAAAGACGTGTATCAGATCAATTCTTTGATTAA 239
Query 251 TCTCTATGTGAAATGCAGAGAAACTGTTCGTGCACGCAAGCTGTTCGATTTAATGCCTGA 310
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 TCTCTATGTGAAATGCGGAGAAACTGTTCGTGCACGCAAGGTGTTCGATTTAATGCCTGA 299
Query 311 GAGAAATGTTGTTTCTTGGTGTGCGATGATGAAGGGATATCAAAATTCTGGGtttgattt 370
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GAGAAATGTGGTTTCTTGGTGTGCGATGATGAAGGGTTATCAAAATTCTGGGTTTGATTT 359
Query 371 tgaagttttgaagctttttaaaagtatgtttttttCTGGTGAATCGAGACCTAATGAGTT 430
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 360 TGAAGTTTTGAAGCTTTTTAAAAGTATGGTTTTTTCTGATGAATCGAGACCTAATGAGTT 419
Query 431 TGTAGCTACTGTGGTTTTTAAGTCTTGTTCAAACTCTGGGAGGATTGAAGAAGGTAAACA 490
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 TGTAGCTACTGTGGTTTTTAAGTCTTGTTCAAGCTCTGGGAGGATTGAAGAAGGTAAACA 479
Query 491 GTTTCATGGATGTTTTCTTAAGTATGGTTTGATTTCTCATGAGTTTGTACGGAACACTCT 550
||||||||| ||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 480 GTTTCATGGTTGTTTTCTTAAATCTGGTTTGATGTCTCATGAGTTTGTACGGAATACTCT 539
Query 551 TGTTTACATGTATTCTTTGTGTTCGGGGAATGGCGAGGCTATACGAGTTTTGGATGATCT 610
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 540 TGTCTACATGTATTCTTTGTGTTCGGGTAATGGAGAAGCTATACGAGTTTTGGATGATCT 599
Query 611 TCCTTATTGTGATCTTTCTGTGTTTAGTTCTGCTCTTAGTGGTTATCTAGAGTGTGGTGC 670
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 600 TCCTTATTGTGATCTTTCTGTGTTTAGTTCAGCTCTTAGTGGTTATTTAGAGTGTGGTGC 659
Query 671 TTTTAAAGAA-GGGCTTGATGTTTTGAGAAAGACAGCTAACGAAGATTTTGTTTGGAACA 729
|||||||||| |||| ||| |||||||||| || ||||| |||||||| |||||| |||
Sbjct 660 TTTTAAAGAAGGGGC-TGAGGTTTTGAGAAGGATGGCTAAGGAAGATTTGGTTTGGGACA 718
Query 730 ACCTCACGTATTTGTCTTCTTTACGGCTTTTCTCCAATCTCAGAGATTTGAATTTGGCTC 789
|| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 ACATTACGTATTTGTCTTGTTTACGGCTTTGCTCCAATCTCAGAGATTTGAATTTGGCTA 778
Query 790 TGCAGGTTCATAGCCGAATGGTGAGGTTTGGTTTCAACGCTGAAGTTGAGGCTTGTGGTG 849
|||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 779 GGCAGATTCATAGCCGAATGGTGAGGTTAGGTTTCAACTCTGAAGTTGAGGCATGTGGTG 838
Query 850 CACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTTTATGCTCAGAGAGTTTTCGATG 909
|| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 839 CAATCATTAATATGTATGGGAAATGTGGTAAAGTCCTATATGCCCAGAGAGTTTTCGACA 898
Query 910 ATACACACGCTCAAAACATTTTCTTGAATACAACGATCATGGATGCTTACTTCCAGGATA 969
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ATACACACGCTCAGAACATTGTCTTGAATACAACGATAATGGATGCTTACTTCCAGGATA 958
Query 970 AGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATGGATACTAAAGAGGTTCCACCAA 1029
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 959 AGTCTTTTGAGGAAGCTCTGAATCTGTTTTCAAAGATGGACACTAAAGAGGTTCCTCCGA 1018
Query 1030 ATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCAGAGCTATCGCTTCTAAAACAGG 1089
||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||| |
Sbjct 1019 ATGAGTACACCTTTGCTATTTCGTTGAATTCAATTGCAGAGCTTTCCCTTCTAAAACATG 1078
Query 1090 GCGATCTTCTACATGGACTTGTTTTGAAATCCGGCTATAGGAACCATGTAATGGTAGGCA 1149
|||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1079 GCGATCTTTTACATGGACTTGTTTTGAAATCTGGTTATAGGAACCATGTAATGGTGGGCA 1138
Query 1150 ATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATTGAGGATGCAAGGAAAGCATTCT 1209
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATGCATTGGTTAACATGTACGCTAAAAGTGGCAGCATTGAGGATGCAAGGAAAGCATTCT 1198
Query 1210 CAGGCATGACTTTTAGAGATATAGTTACTTGGAACACAATGATATCTGGATGCTCACATC 1269
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1199 CAGGCATGACTTTTAGAGATATAGTTACTTGGAACACAATGATATGTGGATTCTCACATC 1258
Query 1270 ATGGATTGGGGAGGGAAGCGCTTGAAGCCTTTGATAGAATGATTTTTACAGGAGAGATTC 1329
|||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||
Sbjct 1259 ATGGATTGGGGAGGGAAGGGCTTGAAGCCTTTGATAGAATGATGATTGCTGGAGAGATTC 1318
Query 1330 CCAACCGCATAACTTTTATCGGCGTTTTGCAGGCTTGTAGCCATATTGGTTTTGTGGAGC 1389
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 CCAATCGCATAACTTTTATCGGCGTTTTGCAGGCTTGTAGCCATGTTGGTTTTGTGGAGC 1378
Query 1390 AAGGGCTTCATTACTTTAATCAGCTGATGAAGAAATTTGATGTCCAGCCTGATATACAGC 1449
|||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1379 AAGGGCTTTATTACTTTAATCAGCTAATGAAGAAATTTGATGTTCAGCCTGATCTACAGC 1438
Query 1450 ATTATACATGCATTGTTGGACTTTTGAGCAAGGCTGGAATGTTCAAGGATGCTGAGGATT 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATTATACATGCATTGTTGGACTTTTGAGCAAGGCTGGAATGTTCAAGGATGCTGAGGATT 1498
Query 1510 TCATGAGAACAGCTCCAATTGAATGGGATGTTGTTGCATGGAGAACTTTGCTAAATGCTT 1569
|||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 1499 TCATGAGAACAGCTCCGATTGAATGGGACGTTGTTGCGTGGAGAGCTTTGCTAAATGCTT 1558
Query 1570 GTTATGTTCGCCGGAATTACAGGTTAGGaaaaaaaGTAGCAGAATATGCCATTGAGAAGT 1629
|||||||||||||||||| |||||||||||| || |||||||||||||||||| | ||||
Sbjct 1559 GTTATGTTCGCCGGAATTTCAGGTTAGGAAAGAAGGTAGCAGAATATGCCATTTATAAGT 1618
Query 1630 ATCCAAACGACTCAGGAGTTTACGTATTGTTATCCAATATCCACGCCAAGTCAAGGGAGT 1689
|||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1619 ATCCAAACGATTCGGGAGTTTACGTGTTGTTATCCAATATCCATGCCAAGTCGAGGGAGT 1678
Query 1690 GGGAAGGTGTGGCAAAAGTGCGTTCTTTGATGAATAACAGAGGTGTTAAGAAGGAGCCTG 1749
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1679 GGGAAGGCGTGGCAGAAGTGCGTTCTTTGATGAATAAAAGAGGTGTTAAGAAGGAGCCTG 1738
Query 1750 GAGTAAGCTGGATAGGGATACGTAATCAAACCCATGTGTTTCTTGCAGAGGATAATCAAC 1809
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1739 GAGTCAGCTGGATAGGGATACGTAATCAAACCCATGTGTTTCTTGCAGAGGAAAATCAAC 1798
Query 1810 ACCCCGAGATTACGCTGATTTATGCAAAGGTTAAGGAAGTTATGTCGAAGATTAAACCAT 1869
||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||
Sbjct 1799 ACCCCGAGATTACGCTGATTTATGCAAAGATTAAGGAAGTTTTGTCAAAGATTAGGCCAT 1858
Query 1870 TAGGGTATTCGCCTGATGTTGCTGGAGCTTTCCATGATGTCGATGAAGAACAGAGAGAAG 1929
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1859 TAGGGTATTCGCCTGATGTTGCTGGAGTTTTCCATGATGTCGATGAAGAACAGAGAGAAG 1918
Query 1930 ATAACCTCTCTTATCATAGTGAGAAGCTAGCTGTGGCATATGGTCTGATAAAAACGCCAG 1989
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1919 ATAACCTCTCTTATCATAGTGAGAAGCTAGCTGTGGCATATGGTCTGATGAAAACGCCAG 1978
Query 1990 AGAAATCACCATTGTACGTGACTAAAAACGTGAGGATATGTGATGATTGTCACTCTGCAA 2049
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AGAACTCACCATTGTACGTGACTAAAAACGTGAGGATATGTGATGATTGTCACTCTGCAA 2038
Query 2050 TTAAGCTTATCTCGAAGATCTCAAAACGATACATAGTTATCAGAGATTCCAATCGGTTCC 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 TTAAGCTTATCTCGAAGATCTCAAAACGATACATAGTTATCAGAGATTCCAATCGGTTCC 2098
Query 2110 ATCATTTCCTAGATGGTCAGTGTTCTTGCTGTGATTACTGGTGAA 2154
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2099 ATCATTTCCGAGATGGTCAGTGTTCTTGCTGTGATTACTGGTGAA 2143
> Ahg947406 jgi|Araly1|947406|scaffold_703635.1
Length=1684
Score = 60.2 bits (32), Expect = 7e-08
Identities = 44/50 (88%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 280 GTGCACGCAAGCTGTTCGATTTAATGCCTGAGAGAAATGTTGTTTCTTGG 329
||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct 499 GTGCACGTAAGGTGTTTGGTGAAATGCCTGAGAGAAATGTTGTTTCTTGG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89969158690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5