BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39720.1 Length=661 Score E Sequences producing significant alignments: (Bits) Value Ahg947843 jgi|Araly1|947843|scaffold_704072.1 747 0.0 > Ahg947843 jgi|Araly1|947843|scaffold_704072.1 Length=556 Score = 747 bits (404), Expect = 0.0 Identities = 512/563 (91%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 9 AACGGTGGAAGAGAC-AAAGATGTGTAGTTCCGATTCTCTTCAGCTTCACAATGTCTTCG 67 ||||||||||||||| ||||||| | | || | | || ||||||||| |||||||| | Sbjct 1 AACGGTGGAAGAGACAAAAGATGAATTGCTCTG-GT-TC-TCAGCTTCATAATGTCTTTG 57 Query 68 TCTATGGTAGCTTTCAAGATCCCGACGTCATCAACGTCATGCTTGATCGTACTCCTGAGA 127 ||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||| Sbjct 58 TCTATGGTAGCTTTCAAGAGCCCGACGTCATCAACGTGATGCTTGACCGTATTCCTGAGA 117 Query 128 TAGTCTCCGCAACACTCCCGGGCTTTCAAAGGTTTAGGCTTAAAGGACGTTTGTATCCAT 187 | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 118 TCGTCTCCGCAACACTCCCGGGCTTTCAGAGGTTTAGGATTAAAGGACGTTTGTATCCAT 177 Query 188 GTATTGTTCCTTCTGAGAAAGGAGAAGTTCATGGCAAGGTACTAATGGGAGTAACAAGTG 247 |||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| Sbjct 178 GTATTGTTCCCTCTGAGAAAGGAGAAGTTCATGGAAAGGTACTAATGGGATTAACAGGTG 237 Query 248 ATGAGCTTGAGAATTTAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACCGTCGGGA 307 |||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||| Sbjct 238 ATGAACTTGAGAATATAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACTGTTGGGA 297 Query 308 TTGTTAGGGAGGACAATTCGGAGAAGATGGCAGTGAAAACATATATGTGGATCAACAAGG 367 || |||||||||||| ||||||||||||| |||||||||| ||||| |||||||||| || Sbjct 298 TTTTTAGGGAGGACACTTCGGAGAAGATGCCAGTGAAAACGTATATATGGATCAACAGGG 357 Query 368 CTGATCCTGATATGTTTGGAGAATGGAATTTCGAGGAATGGAAACGGTTGCAC-AAGAAG 426 |||||||||| ||||||||||||||| |||| |||||||||||||| |||||| ||| || Sbjct 358 CTGATCCTGACATGTTTGGAGAATGGGATTTTGAGGAATGGAAACGATTGCACAAAG-AG 416 Query 427 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGGGA 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 417 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGG-A 475 Query 487 AA-TGATGATATT-AGCCATGTCCTACGCGAAGATCAATAGGATAAGACTCCATCGTCTT 544 || ||||||| || ||||||| ||||||||||||||||| |||| ||||||||| ||| | Sbjct 476 AAGTGATGAT-TTCAGCCATGCCCTACGCGAAGATCAATCGGATGAGACTCCATTGTCCT 534 Query 545 G-GATGGACTTGTGTTTGAGTAT 566 | | ||||||||||||| ||||| Sbjct 535 GAG-TGGACTTGTGTTTTAGTAT 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24246175212 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5