BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39720.1
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947843 jgi|Araly1|947843|scaffold_704072.1 747 0.0
> Ahg947843 jgi|Araly1|947843|scaffold_704072.1
Length=556
Score = 747 bits (404), Expect = 0.0
Identities = 512/563 (91%), Gaps = 12/563 (2%)
Strand=Plus/Plus
Query 9 AACGGTGGAAGAGAC-AAAGATGTGTAGTTCCGATTCTCTTCAGCTTCACAATGTCTTCG 67
||||||||||||||| ||||||| | | || | | || ||||||||| |||||||| |
Sbjct 1 AACGGTGGAAGAGACAAAAGATGAATTGCTCTG-GT-TC-TCAGCTTCATAATGTCTTTG 57
Query 68 TCTATGGTAGCTTTCAAGATCCCGACGTCATCAACGTCATGCTTGATCGTACTCCTGAGA 127
||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||
Sbjct 58 TCTATGGTAGCTTTCAAGAGCCCGACGTCATCAACGTGATGCTTGACCGTATTCCTGAGA 117
Query 128 TAGTCTCCGCAACACTCCCGGGCTTTCAAAGGTTTAGGCTTAAAGGACGTTTGTATCCAT 187
| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 118 TCGTCTCCGCAACACTCCCGGGCTTTCAGAGGTTTAGGATTAAAGGACGTTTGTATCCAT 177
Query 188 GTATTGTTCCTTCTGAGAAAGGAGAAGTTCATGGCAAGGTACTAATGGGAGTAACAAGTG 247
|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 178 GTATTGTTCCCTCTGAGAAAGGAGAAGTTCATGGAAAGGTACTAATGGGATTAACAGGTG 237
Query 248 ATGAGCTTGAGAATTTAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACCGTCGGGA 307
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 238 ATGAACTTGAGAATATAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACTGTTGGGA 297
Query 308 TTGTTAGGGAGGACAATTCGGAGAAGATGGCAGTGAAAACATATATGTGGATCAACAAGG 367
|| |||||||||||| ||||||||||||| |||||||||| ||||| |||||||||| ||
Sbjct 298 TTTTTAGGGAGGACACTTCGGAGAAGATGCCAGTGAAAACGTATATATGGATCAACAGGG 357
Query 368 CTGATCCTGATATGTTTGGAGAATGGAATTTCGAGGAATGGAAACGGTTGCAC-AAGAAG 426
|||||||||| ||||||||||||||| |||| |||||||||||||| |||||| ||| ||
Sbjct 358 CTGATCCTGACATGTTTGGAGAATGGGATTTTGAGGAATGGAAACGATTGCACAAAG-AG 416
Query 427 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGGGA 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 417 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGG-A 475
Query 487 AA-TGATGATATT-AGCCATGTCCTACGCGAAGATCAATAGGATAAGACTCCATCGTCTT 544
|| ||||||| || ||||||| ||||||||||||||||| |||| ||||||||| ||| |
Sbjct 476 AAGTGATGAT-TTCAGCCATGCCCTACGCGAAGATCAATCGGATGAGACTCCATTGTCCT 534
Query 545 G-GATGGACTTGTGTTTGAGTAT 566
| | ||||||||||||| |||||
Sbjct 535 GAG-TGGACTTGTGTTTTAGTAT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24246175212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5