BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39730.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494019 jgi|Araly1|494019|fgenesh2_kg.7__3452__AT5G39730.1 1074 0.0
Ahg947843 jgi|Araly1|947843|scaffold_704072.1 422 3e-117
Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1 95.3 6e-19
> Ahg494019 jgi|Araly1|494019|fgenesh2_kg.7__3452__AT5G39730.1
Length=765
Score = 1074 bits (581), Expect = 0.0
Identities = 712/773 (92%), Gaps = 18/773 (2%)
Strand=Plus/Plus
Query 27 aaaaaaaaaaCAGAGT--AGAGATTGATaaaaaaaaaaTGAGTAGCTCCGATTCTCCTCA 84
|||||||||||||||| | ||||||| |||||||||||||||| |||||||| ||||||
Sbjct 1 AAAAAAAAAACAGAGTAAAAAGATTGAAAAAAAAAAAATGAGTAACTCCGATTTTCCTCA 60
Query 85 GCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACATCATCCATGTCATGCT 144
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACGTCATCCATGTCATGCT 120
Query 145 TAATCGTATTCCTGAGATTGTCTCTGCAACACTTCCTGGCTTTAAGAGATTTAGGCTTAA 204
|||||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||||
Sbjct 121 TAATCGTATTCCTGAGATCGTCTCTGCAACACTTCATGGCTTTCAGAGGTTTAGGCTTAA 180
Query 205 AGGACGTTTGTATCCATGTATTATCCCCTCTGAGAATGGAGAAGTTCATGGAAAGGTACT 264
|||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 181 AGGACGCTTGTATCCATGTATTGTTCCCTCTGAGAATGGACAAGTTCATGGAAAGGTACT 240
Query 265 AATGGGATTGACTAATGATGAACTTGAGAATGTAGATTGGGTTGAAGGAAACGAATATGA 324
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AATGGGATTAACGAATGATGAACTTGAGAATGTAGATTGGGTTGAAGGAAATGAATATGA 300
Query 325 AAGAGTGTTTGTTGAAGTTGTAAGAAAAGACAATTCTGAGAAGATGAGAGTGGAAACATA 384
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAGAGTGACTGTTGAAGTTGTAAGAAAAGACAATTCTGAGAAGATGACAGTGGAAACATA 360
Query 385 TCCATGGATCAACAAGAATGATCCTGATATTGGTGGAGAATGGGATTTCGAGGAATGGAA 444
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCATGGATTAACAAGAATGATCCTGATATTGGTGGAGAATGGGATTTCGAGGAATGGAA 420
Query 445 ACGATTACACATGAAGACATTCATAGAGGCGTTCACGGAGATCATGGAAAGGAAGAGGAA 504
|||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 421 ACGATTGCACATGAAGAAATTCATAGAGGCGTTCACGGAGATTATGGAGAGGAAGAGGAA 480
Query 505 TCCACAAGGAAAGGGTAGAGATGATTTCAGCAATGTACTCAAAGAAGAAGATCCCGCGAA 564
||||| |||||||| ||||||||||||||| |||| || |||||||| | | ||| |||
Sbjct 481 TCCACTGGGAAAGGGAAGAGATGATTTCAGCCATGTCCTAAAAGAAGATGGTTCCGGGAA 540
Query 565 TGCTCCATCGTCTTGAATGGATTTGTGTCGAGTATGTTCTATATATCACCTTTGTGTCTA 624
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 541 TGCTCCATCGTCTTGAATGGATTTGTGTTTAGTATAATCTATATATCAACTTTGGGTCTA 600
Query 625 AACTCC-ATATTAAATaaaaaaaGCTGGAGAGTCTAGCTAGGTTATTGTGGAGACTAATG 683
|||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 601 AACTCCGA-ATTAAATAAAAAA-GCTGGAGAGTCTAGCTAGGT-ATTGTGGAGACTAATG 657
Query 684 ACAAGAAT-GTTTTTGTCATGTTGTATTGTAAGATTTGAGTTATATATCATGTGGATTGT 742
|||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 658 ACAAGAATAGTTTT-GTCATGTTGTATTGTAAGATTTGAGTTATA-AT---GTGGATTGT 712
Query 743 ATTATTGTGTTATA---CA--A-GAGTCTTTAAGAGATTTTGGCATCTTACTT 789
||||||||||| || || | ||||||| |||| |||||||||||||||||
Sbjct 713 ATTATTGTGTTTTAAGTCATTAAGAGTCTTGAAGATATTTTGGCATCTTACTT 765
> Ahg947843 jgi|Araly1|947843|scaffold_704072.1
Length=556
Score = 422 bits (228), Expect = 3e-117
Identities = 387/464 (83%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 81 CTCAGCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACATCATCCATGTCA 140
|||||||||| ||| |||| ||||||||||||||||||||||| ||| ||||| | || |
Sbjct 37 CTCAGCTTCATAATGTCTTTGTCTATGGTAGCTTTCAAGAGCCCGACGTCATCAACGTGA 96
Query 141 TGCTTAATCGTATTCCTGAGATTGTCTCTGCAACACTTCCTGGCTTTAAGAGATTTAGGC 200
||||| | |||||||||||||| ||||| |||||||| || |||||| |||| ||||||
Sbjct 97 TGCTTGACCGTATTCCTGAGATCGTCTCCGCAACACTCCCGGGCTTTCAGAGGTTTAGGA 156
Query 201 TTAAAGGACGTTTGTATCCATGTATTATCCCCTCTGAGAATGGAGAAGTTCATGGAAAGG 260
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 157 TTAAAGGACGTTTGTATCCATGTATTGTTCCCTCTGAGAAAGGAGAAGTTCATGGAAAGG 216
Query 261 TACTAATGGGATTGACTAA-TGATGAACTTGAGAATGTAGATTG-GGTTGAAGGAAACGA 318
||||||||||||| || | |||||||||||||||| ||||| | |||||| ||||| ||
Sbjct 217 TACTAATGGGATTAAC-AGGTGATGAACTTGAGAATATAGAT-GCGGTTGAGGGAAATGA 274
Query 319 ATATGAAAGAGTGTTTGTTGA-AGTTGTAAGAAAAGACAATTCTGAGAAGATGAGAGTGG 377
|||||| |||||| ||||| | || || | | |||| ||| ||||||||| ||||
Sbjct 275 ATATGAGAGAGTGACTGTTGGGATTTTTAGGGAG-GACACTTCGGAGAAGATGCCAGTGA 333
Query 378 AAACATATCCATGGATCAACAAGAATGATCCTGATATTGGT-GGAGAATGGGATTTCGAG 436
|||| ||| ||||||||||| | ||||||||| || | | |||||||||||||| |||
Sbjct 334 AAACGTATATATGGATCAACAGGGCTGATCCTGACAT-GTTTGGAGAATGGGATTTTGAG 392
Query 437 GAATGGAAACGATTACACAT-GAAGACATTCATAGAGGCGTTCACGGAGATCATGGAAAG 495
|||||||||||||| |||| || || |||||||||| | |||| | | ||||||||| |
Sbjct 393 GAATGGAAACGATTGCACAAAGA-GAAATTCATAGAGACTTTCAAGAAAATCATGGAATG 451
Query 496 GAAGAGGAATCCACAAGGAAAGGGTAGAGATGATTTCAGCAATG 539
|||| ||| || || ||| ||| || |||||||||||| |||
Sbjct 452 TAAGAAGAAACCTCAGGGACAGGAAAGTGATGATTTCAGCCATG 495
> Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1
Length=690
Score = 95.3 bits (51), Expect = 6e-19
Identities = 165/217 (76%), Gaps = 20/217 (9%)
Strand=Plus/Plus
Query 242 GGAGAAGTTCA-TGGAAAGGTAC-TAATGGGATTGACTA-ATGATGAACTTGAGAA-TG- 296
||||||| ||| |||||||| | | | |||| | || | ||||||||| ||| || ||
Sbjct 175 GGAGAAG-TCACCGGAAAGGTGCTTGA-GGGAATAAC-AGATGATGAAC-TGA-AATTGT 229
Query 297 TAGATTG-GGTTGAAGGA-AACGAATATGAAAGAGTGTTTGTTGAAGTTGT-AAGAAAAG 353
|||| || | ||| |||| |||||||| ||| | ||||||||| || | | |
Sbjct 230 TAGA-TGAGTTTG-AGGATGTTGAATATGACAGAAAGGCTGTTGAAGTGGTGCTG-ACGG 286
Query 354 ACAATTCTGAGAAGATG-AGAGTGGAAACATATCCATGGATCAAC-AAGAATGATCCTGA 411
| | ||| |||||| || | ||| ||||||||| ||||| ||| ||| ||||||| ||
Sbjct 287 ATACTTCAGAGAAGCTGCA-AGTCGAAACATATGTATGGAAGAACAAAG-ATGATCCGGA 344
Query 412 TATTGGTGGAGAATGGGATTTCGAGGAATGGAAACGA 448
| || |||||||||||||||||||||||||||||||
Sbjct 345 TCTTTATGGAGAATGGGATTTCGAGGAATGGAAACGA 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5