BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39740.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947841 jgi|Araly1|947841|scaffold_704070.1 1709 0.0
Ahg480054 jgi|Araly1|480054|fgenesh2_kg.3__2755__AT3G25520.1 1358 0.0
Ahg898932 jgi|Araly1|898932|Al_scaffold_0005_2898 501 5e-141
> Ahg947841 jgi|Araly1|947841|scaffold_704070.1
Length=1099
Score = 1709 bits (925), Expect = 0.0
Identities = 1042/1098 (95%), Gaps = 9/1098 (1%)
Strand=Plus/Plus
Query 33 TCTTGCCATCTTTTGTCACTCATCTTCACAGGAAACAATGGTGTTTGTGAAGTCCTCCAA 92
||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 TCTTGCCTTCTTGTGTCACTCATCTTCACAGCAAACGATGGTGTTTGTGAAGTCCTCCAA 60
Query 93 ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGATGGG-AAGA 151
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGA-GGGAAAGA 119
Query 152 CTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAACAAGTACAACACCCCTA 211
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 120 CTGATTACAGGGCAAGGATTCGTCTTATCAATCAAGATAAGAACAAGTACAACACGCCTA 179
Query 212 AGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTGTGGCACAGATTGTATCTGCAA 271
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 180 AGTACCGTTTTGTTGTCCGATTTACCAACAAAGACATCGTGGCACAGATTGTGTCTGCAA 239
Query 272 GCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGAC 331
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GTATAGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACATGAGCTTCCTCAGTATGGAC 299
Query 332 TCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGTC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCCCGTC 359
Query 392 GTGTTCTGAAAATGCTGGAAATGGATGATGAGTACGAGGGAAACGTAGAGGCCACTGGAG 451
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 360 GTGTTCTGAAAATGTTGGAAATGGATGACGAGTATGAGGGAAACGTAGAGGCCACTGGAG 419
Query 452 AGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTG 511
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 420 AGGACTTTTCTGTGGAACCAACGGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTCG 479
Query 512 GACTTATCAGGACTACCACTGGAAACCGTGTGTTTGGTGCACTCAAGGGAGCTTTGGACG 571
||||||||||||| || || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 480 GACTTATCAGGACCACAACGGGAAACCGTGTGTTTGGTGCTCTCAAGGGTGCTTTGGACG 539
Query 572 GAGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGC 631
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GAGGTCTTGATATCCCACACAGTGACAAGAGATTTGCTGGTTTCAACAAAGAGAACAAGC 599
Query 632 AACTTGATGCTGAAATCCACAGGAACTACATCTACGGTGGCCACGTCTCAAACTACATGA 691
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 600 AACTTGATGCTGAAATCCACAGGAACTACATCTATGGTGGCCATGTCTCAAACTACATGA 659
Query 692 AGCTGTTGGGGGAAGATGAGCCGGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGA 751
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCTGTTGGGTGAAGATGAGCCAGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGA 719
Query 752 AAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAG 811
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 720 AAGGAGTTGAAGCTGAGAGCATTGAGGAGATGTACAAGAAGGTTCACGCAGCTATTCGAG 779
Query 812 CAGAACCCAACCATAAGAAAACCGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACT 871
|||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 780 CAGACCCCAACCCTAAGAAAACCGAGAAACCTGCCCCCAAGGAACACAAGAGGTACAACT 839
Query 872 TGAAGAAACTGACTTACGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAA 931
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 840 TGAAGAAACTGACTTATGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTTAAGGCATTGA 899
Query 932 ACGGAGCAGGTGGtgatgatgatgatga-g-g-atgatgaAGAGTAAATCACCAATCAAG 988
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct 900 ACGGAGCAGGTGGTGATGATGATGATGATGAGGATGATGAAGAGTAAATCACCAATCCAG 959
Query 989 CCTTCTTTGTCTCAT-GCCTCTAGTAGCTTTTTACTTAT-TTATTTTCAGACTAAAACAC 1046
||| |||||||| || ||||||||||||| ||||||| | || ||||||||| |||||||
Sbjct 960 CCTCCTTTGTCT-ATTGCCTCTAGTAGCTATTTACTTGTGTT-TTTTCAGACCAAAACAC 1017
Query 1047 TCAGTTTTTGTTTTCACATTTTAGTTGCGTTTGAAGATTTTGAATTCGAGGATATGTTTT 1106
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1018 TCAGTTTTTGTTTTCAAATTTTAGTTGCGTTGGAAGATTTTGATTTCGAGGATATGTTTT 1077
Query 1107 GTTTGAAGAATTTATTAT 1124
|||||||||||||||||
Sbjct 1078 CTTTGAAGAATTTATTAT 1095
> Ahg480054 jgi|Araly1|480054|fgenesh2_kg.3__2755__AT3G25520.1
Length=1131
Score = 1358 bits (735), Expect = 0.0
Identities = 896/972 (92%), Gaps = 17/972 (2%)
Strand=Plus/Plus
Query 65 AAACAATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGA 124
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 53 AAACAATGGTGTTTGTGAAGTCCTCCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTTA 112
Query 125 AGTTCAGGAGAAGGAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATC 184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 113 AGTTCAGGAGAAGAAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAACC 172
Query 185 AAGACAAGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAG 244
||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 173 AAGACAAGAACAAGTACAATACACCTAAGTACCGTTTTGTTGTCCGGTTTACCAACAAAG 232
Query 245 ACATTGTGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTT 304
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 233 ACATAGTGGCACAGATTGTCTCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCTT 292
Query 305 ACGCACATGAGCTT-CCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCT 363
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 293 ACGCACATGAG-TTGCCTCAGTATGGACTCACTGTTGGTCTTACAAACTATGCTGCAGCT 351
Query 364 TACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATGATGAG 423
|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||
Sbjct 352 TACTGTACTGGCCTTCTTTTGGCTCGCCGTGTTCTGAAGATGTTGGAAATGGATGACGAG 411
Query 424 TACGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGA 483
|| ||||| ||||||||||||||||||||||||||||| | || |||||||| || ||
Sbjct 412 TATGAGGGCAACGTAGAGGCCACTGGAGAGGACTTTTCCATTGAGCCAACTGAGTCGAGG 471
Query 484 AGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTG 543
|||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 472 AGACCTTTCCGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACAGGAAACCGTGTG 531
Query 544 TTTGGTGCACTCAAGGGA-----G----CTTTGGACGGAGGTCTTGATATCCCTCACAGT 594
|||||||| ||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct 532 TTTGGTGCCCTCAAGGTACTTAAGGGTGCTTTGGATGGAGGTCTTGATATCCCTCACAGT 591
Query 595 GACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGG 654
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 592 GACAAGAGATTTGCTGGTTTCAACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGG 651
Query 655 AACTACATCTACGGTGGCCACGTCTCAAACTACATGAAGCTGTTGGGGGAAGATGAGCCG 714
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 652 AACTACATCTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCA 711
Query 715 GAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATC 774
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 712 GAGAAGTTACAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATC 771
Query 775 GAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCCAACC-ATAAGAAAAC 833
|| ||| ||||||||||||||||||||||||| || ||||| ||||||| | ||||||||
Sbjct 772 GAAGAGTTGTACAAGAAGGTTCACGCAGCTATTCGCGCAGACCCCAACCCA-AAGAAAAC 830
Query 834 CGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTACGAAGA 893
||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 831 CGAGAAACCTGCCCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTGACGTACGAGGA 890
Query 894 GAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAAACGGAGCAGGTGGtgatgatga 953
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 891 GAGGAAGAACAAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGA 950
Query 954 tgatgaggatgatgaAGAGTAAATCACCAATCAAGCCTTCTTTGTCTCATGCCTCTAGTA 1013
|||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| |||
Sbjct 951 TGATGAGGATGATGAAGAGTAAATCAG---TCAAGCCTTCTTTATCTTATGTCTCTTGTA 1007
Query 1014 GCTTTTTA-CTT 1024
|||||||| |||
Sbjct 1008 GCTTTTTATCTT 1019
> Ahg898932 jgi|Araly1|898932|Al_scaffold_0005_2898
Length=906
Score = 501 bits (271), Expect = 5e-141
Identities = 603/760 (79%), Gaps = 36/760 (5%)
Strand=Plus/Plus
Query 79 GTGAAGTCCTCCA-AA-TCGAATG-CTTACTTC-AAGAGGTACCAAGTGAAGTTCAGGAG 134
|||||| || ||| || || || | |||| ||| | |||||| || || || | ||||||
Sbjct 10 GTGAAG-CC-CCAGAATTC-AAGGCCTTA-TTCGATGAGGTATCAGGTCAAATACAGGAG 65
Query 135 AAGGAGAGATGGGAAGACTGATTA-CAGGGCAAGGATCCGTC-T-T-ATCAATCAAGACA 190
||| |||||||| ||||||||||| | | || || ||||||| | | |||||||||||||
Sbjct 66 AAGAAGAGATGGCAAGACTGATTATC-GTGCCAGAATCCGTCGTCTAATCAATCAAGACA 124
Query 191 AGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTG 250
||||||| |||||||| || ||||| || ||||||||| ||||||| |||||||||||
Sbjct 125 AGAACAAATACAACACTCCAAAGTATCGGTTTGTTGTTAGATTTACAAACAAAGACATAA 184
Query 251 TGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCAC 310
|||||||||||||||||| ||||| |||||||| | || ||| | ||||| || |
Sbjct 185 CGGCACAGATTGTATCTGCGAGCATTGCTGGTGATGTAATTCTCGCTGCTGCTTATGCTC 244
Query 311 ATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTA 370
| ||||| || || ||||| || | |||||||||||| |||||| ||||||| |||||||
Sbjct 245 ACGAGCTGCCACAATATGGGCTTAATGTTGGTCTTACAAACTATTCTGCAGCATACTGTA 304
Query 371 CTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATG-ATGAGTACGAG 429
|||| ||||| ||||||| ||||| ||||||||| | |||||||||| | ||||| ||
Sbjct 305 CTGGACTTCTCCTGGCTCGACGTGTCCTGAAAATGTTTGAAATGGATGCA-GAGTATGAA 363
Query 430 GGAAA-CGTAGAGGCCACTGGAGAGGACTTT-TCTGTGGAACCAACTGATTCCAGAAGAC 487
||||| | | |||||| |||| || || ||| || |||||||| ||||| ||| ||||
Sbjct 364 GGAAATC-TCGAGGCCTCTGGGGAAGA-TTTCTCAGTGGAACCTACTGAAAACAGGAGAC 421
Query 488 CTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTGTTTG 547
| |||||||||||||||||||||||||||||||| || || || ||||||||||| ||||
Sbjct 422 CGTTCCGTGCTCTTCTTGATGTTGGACTTATCAGAACAACTACCGGAAACCGTGTCTTTG 481
Query 548 GTGCACTCAAGGGAGCT-TTGGACGGAGGTCTTGATATCCCTCACAGTGACAAGAGATTT 606
|||| || ||||| || ||| | || ||||||||||| ||||| || |||||||||||
Sbjct 482 GTGCTCTGAAGGGTGCACTTG-ATGGTGGTCTTGATATACCTCATAGCGACAAGAGATTC 540
Query 607 GCTGGTTTC-CACAAAGAGAACAAGCAACTTGATGCTGAAA-TCCACAGGAACTACATCT 664
|| || ||| | |||||| ||||| || || ||| | | || || ||| || |||||||
Sbjct 541 GCAGGATTCTC-CAAAGAAAACAAACAGCTCGATTCCGCAACTC-ACACCAAATACATCT 598
Query 665 ACGGTGGCCACGTCT-CAAACTACATGAAG-CTGTTGGGGGAAGATGAGCCGGAGAAGTT 722
| ||||| || || | || | ||||||||| || | | |||| ||||| ||||| ||
Sbjct 599 ATGGTGGTCATGT-TGCAGATTACATGAAGACTCTAAACG-AAGACGAGCCCGAGAAATT 656
Query 723 GCAAACTCACTTCAGTGCTTACATTAAGAAAGG-AGTTGAAGCTGA-GAGCATCGAGGAG 780
|| ||||| ||||||| || | |||||||| | ||||||| || || || ||||
Sbjct 657 CCAGACTCATTTCAGTGAGTATGTGAAGAAAGGTA-TTGAAGCAGATGAA-ATGGAGGC- 713
Query 781 AT-GTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCC 819
|| ||||||||||||||| || || |||||||| || |||
Sbjct 714 ATTGTACAAGAAGGTTCATGCCGCGATCCGAGCTGA-CCC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5