BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39760.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1 1797 0.0
Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1 472 4e-132
> Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1
Length=1306
Score = 1797 bits (973), Expect = 0.0
Identities = 1138/1213 (94%), Gaps = 30/1213 (2%)
Strand=Plus/Plus
Query 110 ATATTAATGTTTTAAGCTATGATGGATATGACTCCTACAATAACAACAACAACAACACCA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 58 ATATTAATGTTTTAAGCTATGATGGATATGACTCCTACAATAACAACAACAAC-A-A-CT 114
Query 170 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 174
Query 230 ATTTCCTTTAGCAACGGCATCATCAAACGccaccaccaccaccaccaTCCTCTCCTCTTT 289
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 175 ATTTCCTTTAGCAACGGCATCATCAAACG------CCACCACCACCATCCTCTCCTCTTT 228
Query 290 ACTTACAAAGAATGTCTCAAAAACCACGCGGCGGCTTTAGGTGGTCACGCTCTCGACGGT 349
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 229 ACTTACAAAGAATGTCTCAAAAACCACGCGGCGTCGTTAGGTGGTCATGCTCTCGACGGT 288
Query 350 TGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCTCCGATCCAACTTCTCTCAAATGT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCTCCGATCCAACTTCTCTCAAATGT 348
Query 410 GCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGATAACAACAACGACTCT 469
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 349 GCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGACAACAACAACGACTCA 408
Query 470 TCCCAAATCCCTCCTCCTCCTTCCACCGCCGTAGAGTATCAacctcaccaccgtcatcat 529
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 TCCCCAATCCATCCTCCTCCTTCTACCGCCGTAGAGTATCAACCTCACCACCGTCATCAT 468
Query 530 ccaccaccaccaccacctcctccaccaccacGTAGTCCTAACTCAGCTTCTCCTCCACCA 589
||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 469 CCACCACCACCACTACCTCCACCACCGCCACGTAGTCCTAACTCTGCTTCTCCTCCACCA 528
Query 590 ATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGTACTAATAACAACAACAACAACTTA 649
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 529 ATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGAACTAATAACAACAACAACAACTTA 588
Query 650 GCTTCTTTCTCCGATCTTAACTTCTCCGCCGGAAACAaccaccaccaccaccaccaACAT 709
||||||||||||||||| || ||||||| |||||||||||||||||||||||| | |||
Sbjct 589 GCTTCTTTCTCCGATCTCAATTTCTCCGGCGGAAACAACCACCACCACCACCA--A-CAT 645
Query 710 ACTCTTCACGGATCTCGTAAAAGATTCCGAACAAAATTCAGCCAGTTTCAGAAAGAGAAG 769
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 646 ACTCTTCACGGTTCTCGTAAAAGATTCCGAACAAAATTCAGTCAGTTTCAGAAAGAGAAG 705
Query 770 ATGCATGAATTCGCCGAACGTGTTGGTTGGAAGATGCAAAAACGTGACGAAGACGATGTT 829
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 706 ATGCATGAATTCGCCGAACGACTTGGTTGGAAGATGCAGAAACGTGACGAAGACGATGTT 765
Query 830 CGTGATTTTTGCCGGCAGATCGGAGTTGATAAAAGTGTTCTCAAAGTTTGGATGCATAAC 889
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 766 CGTGATTTTTGCCGGCAGATCGGAGTTGATAAAAGTGTTCTTAAAGTTTGGATGCATAAC 825
Query 890 AACAAAAACACCTTTAACCGCCGTGATATCGCCGGAAACGAGATCCGGCAA-ATCGATAA 948
||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 826 AACAAAAACACTTTTAACCGCCGTGATCTCGCCGGAAACGAGATCCGG-AAGATCGATAA 884
Query 949 CGGCGGAGGAAACCACACTCCGATTCTCGCCGGCGAGATTAATAACCATAACAATGGACA 1008
||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 885 CGGCGGAGGAAACCATACTCCGATTCTAACCGGCGAGATTAACAACAATAACAATGGACA 944
Query 1009 CCACGGTGTCGGAGGAGGAGGAGAGCTTCACCAGAGTGTTAGTAGCGGCGGTGGTGGCGG 1068
||||| ||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 945 CCACGA---CGGCGGAGGAGGAGAGCTTCACCACAGTATTAGTAGCGGCGGTGG---CGG 998
Query 1069 AGGATTTGATAGTGATAGCGGCGGAGCTAACGGTGGTAACGTTAACGGATCATCGTCGTC 1128
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 999 AGGATTTGATAGTGATAGCGGCGGAGCTAACGGCGGTAACGTTAACGGATCGTCGTCGTC 1058
Query 1129 GTGAAGTTAAAGATGAGAGTGTCAGGTTAATAAGAAGCTTA-GAGTAAGCTTATTCGTAT 1187
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1059 GTGAAGTTAAAGATGAGAGTATCAGATTAATAAGAAGCTTAAGAGTAAGCTTATTCGTAT 1118
Query 1188 TATCATCGTTAATAACTTTCTATTAAATATTAATT-AAGATCTTTAGCT-T-TGT-TT-G 1242
||||||||||||||||||| |||||| |||||||| || || ||||| | | ||| || |
Sbjct 1119 TATCATCGTTAATAACTTTTTATTAA-TATTAATTGAA-ATATTTAGTTATGTGTGTTTG 1176
Query 1243 TTTTTGCATTATTATT--AGTTTTGATTTAATGTTCTTTACCACGTCGGTGTCTCGCTCG 1300
|||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1177 TTTTTGCATTATTATTTTAGCTTTAATTAAATGTTCTTTACCACGTCGGTGTCTCGCTCA 1236
Query 1301 ATGAGGAATAATA 1313
|||||||||||||
Sbjct 1237 ATGAGGAATAATA 1249
> Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1
Length=1352
Score = 472 bits (255), Expect = 4e-132
Identities = 599/756 (79%), Gaps = 59/756 (8%)
Strand=Plus/Plus
Query 170 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 229
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 310 ACTCCTAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCA 369
Query 230 ATTTCCTTT-AGCAACGGCATCATCAAACGccaccaccaccaccaccaTCCTCTCCTCTT 288
|| || ||| || ||||| ||||||||||||||||||||||||||||| | | || ||
Sbjct 370 ATCTC-TTTCAGTAACGGAATCATCAAACGCCACCACCACCACCACCA-CAACACCG-TT 426
Query 289 TACTTACAAAGAATGTCTCAAAAACCACGCGGCGGCT-TTAGGTGGTCACGCTCTCGACG 347
|| ||||||||||||||||| |||||||||||||| || ||||||||||| || ||||
Sbjct 427 -ACATACAAAGAATGTCTCAAGAACCACGCGGCGGCGATT-GGTGGTCACGCGCTTGACG 484
Query 348 GTTGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCT-CCGATCCAACTTCTCTCAAA 406
||||||||||||||||||||||||| || |||| | ||| |||||||||||||||||||
Sbjct 485 GTTGCGGCGAATTCATGCCGTCTCCTTCTTCAA-CACCTTCCGATCCAACTTCTCTCAAG 543
Query 407 TGTGCTGCTTGTGGCTGCCACCGTAA-TTTCCACCGCCGTGATCCAGATAACAACAACGA 465
||||| |||||||| || |||||||| |||| |||||||||| || || || | |
Sbjct 544 TGTGCAGCTTGTGGTTGTCACCGTAACTTTC-ACCGCCGTGAACCTGACGACTCCTCCTC 602
Query 466 CTCTTCC-CAAA--TCCCTCCT-CC-TCCTTC--C-AC--CG-CCGTA---GAGTATCAa 511
| ||||| | | || || || || || ||| | || | ||| | |||||||||
Sbjct 603 C-CTTCCACCACCGTCTCTTCTTCCATC-TTCAACCACAACCACCGCAATTGAGTATCAA 660
Query 512 cctcaccaccgtcatcatccaccaccaccaccacctcctccaccaccacGTAGTCCTAAC 571
||||| |||||||| || || || || || | | ||||||| | || ||||||||||
Sbjct 661 CCTCATCACCGTCACCACCCTCCTCCTCCGCTAGCTCCTCCTCTTCCTCGTAGTCCTAGT 720
Query 572 TCAGCTTCTCCTCCACCAATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGTA-CTAA 630
||| ||||||| ||||| ||||| ||||| |||||||| ||| ||||||| |||| | ||
Sbjct 721 TCATCTTCTCCGCCACCTATCTCCTCCTCCTACATGCTTTTAGCTCTCTCTGGTAAC-AA 779
Query 631 TAACAACAACAACAACTTAGCTTCTTTCTCCGATCTTAACTTCTCCGCCG-GAAACAacc 689
||| ||| ||| | | | |||| | ||||| |||||| |||||| | |||
Sbjct 780 TAA-AACCACA-C--C---G-TTCT--CA--GATCTAAACTTCGCCGCCGCGGCT-AAC- 825
Query 690 accaccaccaccaccaACATACTCTTCACGGATCTCGTAAAAGATTCCGAACAAAATTCA 749
| | | | || || | | || || || || ||| ||||| | ||||| || |
Sbjct 826 A--ATCTCT-CCGCCG-CG--C-CT----GGCTCACGGAAACGATTCAGGACAAAGTTTA 874
Query 750 GC-CAGTTTCAGAAAGAGAAGATGCATGAATTCGCCGAACGTGTTGGTTGGAAGATGCAA 808
|| || | |||||||||||||||||||||||||||| || | ||||||||||| ||
Sbjct 875 GCTCAAAT-CAGAAAGAGAAGATGCATGAATTCGCCGCTCGAATCGGTTGGAAGATTCAG 933
Query 809 AAACGTGACGAAGACGATGTTCGTGATTTTTGCCG-GCAGATCGGAGTTGATAAAAGTGT 867
||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 934 AAACGCGACGAGGACGAGGTTCGTGATTTTTGCCGTG-AGATCGGAGTTGATAAAGGTGT 992
Query 868 TCTCAAAGTTTGGATGCATAACAACAAAAACACCTT 903
||||||||||||||||||||| ||||||||| ||||
Sbjct 993 TCTCAAAGTTTGGATGCATAATAACAAAAACTCCTT 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5