BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39785.2
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494013 jgi|Araly1|494013|fgenesh2_kg.7__3446__AT5G39785.2 2765 0.0
> Ahg494013 jgi|Araly1|494013|fgenesh2_kg.7__3446__AT5G39785.2
Length=1906
Score = 2765 bits (1497), Expect = 0.0
Identities = 1806/1947 (93%), Gaps = 53/1947 (3%)
Strand=Plus/Plus
Query 1 ACAATTGTTGAAACCGACACAACAAAGACTCGA-TTTTTA-TCTGTACTCGAAGAATCAG 58
||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||
Sbjct 1 ACAATTGTTGAAACCGACACAACAAAGACTC-AGTTTTTATTC-ATACTCGAAGAATCAG 58
Query 59 TAGAAGCGAAGATGATTGAATTAGAAAATTCTGGAATC---GAAGATGAAGAAGAAGTTA 115
|||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 59 AAGAAGCGAAGATGATTGATTTAGAAAATTCTGGAATCGATGAAGAAGAAGAAGAAGTT- 117
Query 116 GT-GAATCGCCGAAATTGGTTTTTAAATTCGCGTTTCAGACGGAAACTTTCGAGAGATTA 174
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 GTCGAATCGCCGAAATTGGTTTTTAAATTCGCGTTTCAAACGGAAACTTTCGAGAGATTA 177
Query 175 AGCAGAGAAGGTTAT-AGATCGTTGAGTGATGATTGCGGTGTGGAGAGCGAGAGCAGTTT 233
||||||||||| ||| | |||| | | |||||||| | | || ||||||||||| |||||
Sbjct 178 AGCAGAGAAGGGTATCA-ATCGGTCACTGATGATT-CTG-GT-GAGAGCGAGAGTAGTTT 233
Query 234 TTTGTCTTCTGATTCTTCTCCGGTGATTTTTACGGCGGCGGCGAGGAAATACGAGACACC 293
|||| || ||||||||||| | |||| |||||||||||||| ||||||||||||||
Sbjct 234 TTTG---TC---TTCTTCTCCGGCGGTTTTCACGGCGGCGGCGAGAAAATACGAGACACC 287
Query 294 GTCGGCGAAAAATCTCACCTTTGTCCTCGAAAACCCAAAGGCGGCGACTTTTAGGGTTGA 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 288 GTCGGCGAAAAATCTCACTTTTGTCCTCGAAAACCCAAAGGCGGCGACTTTTA-----G- 341
Query 354 AGATTGTTTGAAGGAGAAGCAAGAGAAAACAGAGGATTTAGGTTACTCTGTTTTTCACGG 413
| | || | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 342 -G---G-TT---------G-AAGAGAAAACAGAGGATTTAGATTACTCTGTTTTTGACGG 386
Query 414 CGAGGATAAAGTAAAAACAGAGGATTACTCTGTTTCATCCTTTAAGAAGaaaaaaaTCAG 473
|||||| | || |||||||||||| ||||||||||| ||| | ||||||||||||||||
Sbjct 387 CGAGGAGAGAGCAAAAACAGAGGACTACTCTGTTTCTTCCATCGAGAAGAAAAAAATCAG 446
Query 474 ATTTTTAACAGAGGAAGATTTTTTGGAGTCGGACTCTGATTTTGTTGATTCAAGTCAGAC 533
||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 447 ATTTTTAACTGAAGAAGATTTTTTGGAATCGGATTCTGATTTTGTTGATTCAAGTCAGAC 506
Query 534 ATTCACAAGCAACGACGAAGATGGGTTTTTATCAGATTCAGATTTCGCAGAAACATCACT 593
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 507 ATTCACAAGCAACGACGAAGATGGGTTTTTATCAGATTCAGATTTCGCAGAAGCATCACT 566
Query 594 GAAGAAAGGACAAAACCGTAAAAGCGACAATTCTGGTTCTGGTTCTGATTCAGAGgaaga 653
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 567 GGAGAAAGGACAAAACCGTAAAAACGACAATTCTGGTTCTGGTTCTGATTCAGAGGAAGA 626
Query 654 agaagaagaagaTACAAATGGGTTTGAGAGTTTATGGGAGCATCAAGATTTGATAGAACA 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 627 AGAAGAAGAAGATACAAATGGGTTTGAGAGTTTATGGGAACATCAAGATTTGATAGAACA 686
Query 714 ACTTAAGATGGAGATGAAGAAAGTTAAAGCAATTGGTGGGCTTACGACAATTCTTgaaga 773
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 687 ACTTAAAATGGAGATGAAGAAAGTTAAAGCAATTGGTGGGCTTTCGACAATTCTTGAAGA 746
Query 774 agaagaagaagaTGATGATTGTCCTAAGATCATGGAAGATTTAAAACCATGGAGGATTGA 833
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 747 AGAAGAAGAAGAAGATGATTGTCCTAAGATCATGGAAGATTTAAAACCATGGAAGATTGA 806
Query 834 AGAAGAGAAGAAATTTAAACATGTTGATACGATTGGTGAAGTTCATAAGTTCCATAGAAG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AGAAGAGAAGAAATTTAAACATGTTGATACGATTGGTGAAGTTCATAAGTTCCATAGAAG 866
Query 894 TTACAGAGAAAGAATGCGAAAGCTTGATATCTTGAGTTTTCAAAAGTCTTATGCTCTTGG 953
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 867 TTACAGAGAAAGAATGCGAAAACTTGATATCTTGAGTTTTCAAAAGTCTTATGCTCTTGG 926
Query 954 GCTTCTTCAATCAAAGAGCCCTCAACAAGCAACCTC-GACCCTTGGATCCAATCCTTCGC 1012
||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||||||
Sbjct 927 GCTTCTTCAGTCAAAGAACCCTCAACAAGCAACCTCTG-CCGTTGGATCCAATCCTTCGC 985
Query 1013 AGACATCGTTTTCGTCGGTTTTCTCGGTTAAT--ATCCGGTTATGGAAAGCGAAGAAATC 1070
|||| || ||||| ||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 986 AGACGTCATTTTCATCGGTTTTCTCAGTTAATGGAT--GGTTATGGAAAGCGAAGAAATC 1043
Query 1071 TGAAATCGAACCAATGGTTCAATTTGTAAAAGAGATTCAAGGGGAATTAGAGAACGTATA 1130
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1044 GGAAACCGAACCAATGGTTCAATTCATAAAAGAGATTCAGGGGGAATTAGAGAACGTATA 1103
Query 1131 CGTAGGTCAAATGTGTTTGTCGTGGGAAATACTTCACTGGCAATACGAAAAGGCCATTGA 1190
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CGTTGGTCAAATGTGTTTGTCGTGGGAAATACTTCACTGGCAATACGAAAAGGCCATTGA 1163
Query 1191 GTTACTAGAATCTGATGTGTATGGATCTCGTCGGTACAACGAAGTCGCCGGAGAGTTTCA 1250
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1164 ATTACTGGAATCTGATGTGTATGGATCTCGTCTGTACAACGAAGTCGCCGGAGAATTTCA 1223
Query 1251 ACAGTTTCAGGTTTTGCTTCAAAGGTTTCTTGAAAACGAGCCATTCGAAGAGCCTAGAGT 1310
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1224 ACAGTTTCAGGTTTTGCTTCAAAGGTTTCTTGAAAACGAGCCGTTTGAAGAGCCTAGAGT 1283
Query 1311 ACAACATTACATCAAGAGACGTTGTGTTCTTCGTAATCTCCTTCAGATCCCGGTTATTCG 1370
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1284 ACAACATTACATCAAGAGACGATGTGTTCTTCGTAATCTCCTTCAGGTCCCGGTTATTCG 1343
Query 1371 AGAAGATGGAAACAAGGACAAAAAGAATGGCAGAAGAAGAGATTACGAGGAAAATAATGA 1430
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 1344 AGAAGATGGAAACAAGGACAAAAAGAATGGAAGAAGAAAAGATTACGAGGGAAATGATGA 1403
Query 1431 CGGTGTGATTAAAAGCGATCAACTAGTGGAAATAATGGAGGAAACAATTCGATTATTTTG 1490
|||| || |||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1404 TGGTGCGACTAAAAGCGATCAGCTAGTGGAAATAATGGAAGAAACAATTCGATTATTCTG 1463
Query 1491 GCGATTTGTTCGGTGTGATAAGCTTACTAGCTCGATACATGATCAGAAATCGCGAACCAA 1550
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1464 GCGATTTGTACGGTGTGATAAGCTTACTAGCTCGATTCATGATCAGAAATCGCGAACTAA 1523
Query 1551 ATCACAAATAGAACCGGATCATGAAGAAGACTCGGAAGACCTAGAGATGTTCGCAGAGGT 1610
||| || |||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1524 ATCTCAGATAGAACCGGATCATGAAGAAGACTCAGAAGATCTAGAGATGTTCGCCGAGGT 1583
Query 1611 TAAATCACAACTTCAAAATGTAAGTGAGAAAAGGTTGAGAGATGTGTTGAAAAGTGAGAG 1670
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1584 TAAATCACAACTTCAAAATGTAAGTGAGAAAAGGTTGAAAGATGTGTTGAAGAGTGAGAG 1643
Query 1671 ATGTATTATAAGAAGATTCCAAAAGCACAAGGAAGAAGATTC-GACAGAAGATCAAGTAC 1729
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1644 ATGTATTATAAGAAGATTCCAAAAGCACAAGGAAGAAGAATCAG-CAGAAGATCAAGTAC 1702
Query 1730 TTCACTTCTTCTCACAAGTAGACATGAAACTTGTGACAAGAGTCTTGAATATGTCTAAAT 1789
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1703 TTCACTTCTTCTCACAAGTAGACATGAAACTTGTGACAAGGGTCTTGAATATGTCCAAAT 1762
Query 1790 TGACTAGGGACCATTTGGTTTGGTGTCACAATAAGTTGACTAAGATTAACTTCGTAAATA 1849
|||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct 1763 TGACTAGGGACCATTTGGTTTGGTGTCATAATAAGTTAACCAAGATTAACTTTGTAAATA 1822
Query 1850 GAAGGTTACATTTAGATCCTTCCTTTTGTCTT-TTCCCTTGTTGAGATTTTTGATATTGA 1908
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1823 GAAGGTTACATTTAGATCCTTCCTTTTGT-TTATTCCCTTGTTGAGATTTTTGATATTGA 1881
Query 1909 CAAATTTGTACATTGGAGTAATAATGA 1935
|||| ||||||||||||||||||||
Sbjct 1882 CAAAA--GTACATTGGAGTAATAATGA 1906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5