BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39790.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891750 jgi|Araly1|891750|Al_scaffold_0007_3736 1208 0.0
> Ahg891750 jgi|Araly1|891750|Al_scaffold_0007_3736
Length=834
Score = 1208 bits (654), Expect = 0.0
Identities = 778/836 (93%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 141 ATGGGATGTGTACCCAGAATTGAATTTGGTTGTTCAAGCCAAAGCCTTACTCTTTCATGG 200
||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGGGGTGTGTACCCAGAATTGGATTTGGTTGTTCAAGTGAAAACCTTACTCTTTCATGG 60
Query 201 AACTTAAGAGCATGGAATTTGTGTAGATTGAAC-ACAATCTCCCATTTCCAGAAACTTCC 259
||||||||||||||||||||| | ||| || || || || || ||||| | |||||||||
Sbjct 61 AACTTAAGAGCATGGAATTTGGGAAGACTG-ACTACGATTTCGCATTTTCGGAAACTTCC 119
Query 260 TTATCCTTTGGTAGCTTCTACTCGAAAACATTACAAGAACAGTTTGCTTTTGAAGAGATT 319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TTATCCTTTGGTAGCTTCTACTCGAAACCATTACAAGAACAGTTTGCTTTTGAAGAGATT 179
Query 320 TTTAGTTGGTGTTGGCACTGAGGAATCATCACTGTCAGAAGATTTACTAGATGAATCTCT 379
|||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||
Sbjct 180 TTTAGTTGGTGTTGGCACAGAGGAATCATCATTGTCACAAGATTCACTAGATGAATCTCT 239
Query 380 TTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATTGATACAGAGAGATC-AA 438
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 240 TTCTCGACCTCTCACTAGTGATGAGTTGAAGTCACTGCTCATCGATACAGAGAGATCGAA 299
Query 439 AGCTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAA--G-C-G--T- 491
| ||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 300 A-CTTGTTAAAAAATTGAGTGAAGCTAATCAACAGAATCGGTTCCTCAAGCGCCAGCTTA 358
Query 492 -----CAGGAACATGAGATAACTAACATCAAAACTGAGCTTGCACTTATGGAGCTCGAAG 546
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 AAACACAGGAAGATGAGATAACTAACATCAAAAGTGAGCTTGCACTTATGGAGCTCGAAG 418
Query 547 TTCAGGCTCTGGTGAAACTGGCGGAAGAAATAGCAAACCTTGGTATCCCACAAGGTTCTA 606
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 419 TTCAGGCTCTGGTCAAACTGGCGGAAGAAATAGCAAACCTTGGTATTCCAGAAGGTTCTA 478
Query 607 GAAAAATCAGTGGAAAGTACATTCAATCGCACCTTCTCTCTCGTTTAGACGCTGTTCaaa 666
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 479 GAAAAATCAGCGGAAAGTACATTCAGTCACACCTTCTCTCTCGTTTAGACGCTGTTCAAA 538
Query 667 aaaaGATGAAAGAACAAATAAAAGGTGTCGAGGCTGCACAGTCAAAGGAGGTTCATGTGT 726
||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 539 AAAAGTTGAAGGAACAAATAAAAGATGTTGAGGCTGCACAGTCGAAGGAGGTTCATGTGT 598
Query 727 TCTGGATTGGCATGGCAGAGAGTGTACAAGTAATGGGATCGTTCGATGGATGGAGCCAAC 786
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 599 TCTGGATTGGCATGGCAGAGAGTGTGCAAGTAATGGGATCATTCGATGGATGGAGCCAAC 658
Query 787 GTGAGGATCTATCGCCTGAGTACTCAGCTTTATTCACCAAATTCTCCACAACGTTATTCC 846
||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 659 GTGAGGATCTATCCCCTGAGTACACAGCTTTATTCACCAAATTCTCCACCACTTTATTCC 718
Query 847 TTCGTCCCGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCCG 906
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TTCGTCCTGGGCGGTACGAGATGAAGTTCTTAGTGGATGGAGAATGGCAGATCTCACCTG 778
Query 907 AGTTTCCTACTTCAGGAGAAGGATTGATGGAGAACAATGTTTTAGTGGTGGAATAG 962
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 779 AGTTTCCTACTTCGGGAGAAGGAATGATGGAGAACAATGTTTTAGTGGTGGAATAG 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5