BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39800.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1 641 0.0
> Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1
Length=492
Score = 641 bits (347), Expect = 0.0
Identities = 449/496 (91%), Gaps = 16/496 (3%)
Strand=Plus/Plus
Query 105 ATTTGGTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGA 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTGGTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGA 60
Query 165 AGAAAGAGATCTTCTTCTCTTGACATTCTCTCTCCCAAAAGAGCTCCAAGAGACTTTTAC 224
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 AGAAAGAGAGCTTCTTCTCTTGATATTCTCTCTCCCAAAAGAGCTCCAAGAGACTTCTAC 120
Query 225 AAGGGCAAAAACTGCAAACCTACTGG-TTTCCACACGAGAAAAGGAGGATATGTTGTGCA 283
||||||| |||||||||| || ||| |||||| || |||||||||||||||||||||||
Sbjct 121 AAGGGCAGAAACTGCAAATCTT-TGGGTTTCCATACAAGAAAAGGAGGATATGTTGTGCA 179
Query 284 GCCAGATAAGTTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATA 343
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCCAAATAAATTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATA 239
Query 344 TGTATCTCAATGCCCGATACAAGTCAACACAAACGAGTCAACTGAAGCTTCCAAGTGAAA 403
||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TGTATCTCAGTGCCCTTTACAAGTCAACACAAACGAGTCAACCGAAGCTTCCAAGTGAAA 299
Query 404 AATAGTCAGTCAGAAGATATATATG-TTT-TTAAGTCTTCTTCATAAAGCTTTAAGTTAT 461
| ||||||||||||||| | ||||| ||| ||||||||||||||| |||||||||||||
Sbjct 300 A-TAGTCAGTCAGAAGA-A-ATATGGTTTCTTAAGTCTTCTTCATTAAGCTTTAAGTTAG 356
Query 462 GATTATGTTCTTCTATTGTCCGTAATCCTTATGTGCTATTCTTAAAATGGGAGATTTGGT 521
|| | ||||||||| || ||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 357 GACTCTGTTCTTCTTTTATCCTTAATCCTTTTGTGCTATTCTCAAAATGGGAGATTTGGT 416
Query 522 TTGATATTTTCACGAAACGATA-T---G----C-AAAGTAATTGGTAACATGTTTATGCA 572
|||||| |||| |||| |||| | | | ||| |||||||||||||||| |||
Sbjct 417 CTGATATATTCATGAAATGATAATCTAGAATTCCAAAATAATTGGTAACATGTTGATGTG 476
Query 573 GTGGAATATATATTCA 588
||||||||||||||||
Sbjct 477 GTGGAATATATATTCA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5