BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39820.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891747 jgi|Araly1|891747|Al_scaffold_0007_3733 1253 0.0
> Ahg891747 jgi|Araly1|891747|Al_scaffold_0007_3733
Length=978
Score = 1253 bits (678), Expect = 0.0
Identities = 799/857 (93%), Gaps = 10/857 (1%)
Strand=Plus/Plus
Query 13 ATGGATGATGAAGAGAGTAACAACGTTGAAAGATATGACGACGTCGTATTGCCAGGGTTT 72
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGATGATGAAGAGAGTAACATCGTAGAAAGATATGACGACGTCGTTTTGCCAGGGTTT 60
Query 73 AGGTTCCATCCCACTGATGAAGAACTCGTAAGTTTCTACTTGAAACGGAAGGTTTTACAC 132
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AGGTTTCATCCCACTGATGAAGAACTCGTAAGTTTCTACTTGAAAAGGAAGGTTTTACAC 120
Query 133 AAATCTCTTCCCTTTGATCTCATCAAGAAAGTCGACATTTACAAATACGATCCATGGGAC 192
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCTCTTCCCTTTGAGCTCATCAAGAAAGTCGACATTTACAAATACGATCCATGGGAC 180
Query 193 CTCCCAAAGCTTGCAGCGATGGGGGAAAAAGAGTGGTACTTTTATTGTCCTAGAGACAGG 252
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 181 CTCCCAAAGCTTGCGGCGATGGGGGAGAAAGAGTGGTACTTTTACTGTCCAAGAGACAGG 240
Query 253 AAATACCGCAACAGCACAAGACCTAACCGAGTAACTGGAGGTGGCTTCTGGAAAGCAACC 312
|||||||| |||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct 241 AAATACCGGAACAGCACGAGGCCTAACCGAGTAACCGGAGGTGGATTCTGGAAAGCTACC 300
Query 313 GGAACAGACCGGCCTATATACTCATTGGACTCCACTCGATGCATCGGTTTGAAGAAATCA 372
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 GGGACTGACCGGCCTATATACTCATTGGACTCTACTCGATGCATCGGTTTGAAGAAGTCG 360
Query 373 CTTGTGTTCTACCGTGGTCGAGCTGCTAAAGGAGTCAAAACCGATTGGATGATGCATGAA 432
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CTAGTTTTCTACCGTGGTCGAGCTGCTAAAGGAGTCAAAACCGATTGGATGATGCACGAA 420
Query 433 TTTCGTCTCCCTTCTCTCTCTGACTCTCATCACTCATCATATCCCAATTACAATAACAAG 492
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TTTCGGCTCCCTTCTCTCTCTGACTCTCATCACTCAACATATCCCAATTACAATAACAAG 480
Query 493 AAGCAACACCTTAACAATAACAACAACAGCAAGGAGCTTCCTTCAAACGATGCTTGGGCG 552
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AAGCAACACCTTAACAATAACAACAACAGCAAAGAGCTTCCTTCAAACGATGCTTGGGCG 540
Query 553 ATATGTAGAATATTTAAGAAGACAAATGCAGTATCCTCACAAAGATCAATCCCACAATCT 612
|||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 541 ATATGTAGAATATTCAAGAAGACGAATGCGGTATCGTCACAAAGATCAATCCCACAATCT 600
Query 613 TGGGTTTATCCAACGATTCCTGACA--A-C-AAT-CAAC--AG--TCACACAACAACACC 663
||||||||||||||||||||||||| | | ||| |||| | |||||||||||||||
Sbjct 601 TGGGTTTATCCAACGATTCCTGACACCAACCAATACAACTCACACTCACACAACAACACC 660
Query 664 GCAACTCTCTTAGCTTCATCAGACGTTCTCAGCCACATATCAACAAGACAAAACTTTATT 723
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 661 GCGACTCTCTTAGCTTCATCAGACGGTCTCAGCCACATATCAACAAGACAAAACCTTATC 720
Query 724 CCTTCTCCAGTCAACGAACCCGCAAGCTTCACAGAATCAGCTGCTTCTTACTTCGCGTCT 783
|||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 721 CCTTCTCCGGTCAACGAACCCACAAGCTTCACAGAATCAGCTGCTGCTTATTTCGCGTCT 780
Query 784 CAGATGCTCGGAGTCACGTACAATACAGCCAGAAACAACGGAACAGGGGATGCTCTGTTT 843
|| |||||||||||| ||||||| ||| | ||||||| ||||||||||||||||||||||
Sbjct 781 CAAATGCTCGGAGTCCCGTACAACACAACTAGAAACAGCGGAACAGGGGATGCTCTGTTT 840
Query 844 CTGAGAAACAATG-GAA 859
|||| ||||||| |||
Sbjct 841 TTGAGCAACAATGAGAA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5