BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39830.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494007 jgi|Araly1|494007|fgenesh2_kg.7__3440__AT5G39830.1 2226 0.0
> Ahg494007 jgi|Araly1|494007|fgenesh2_kg.7__3440__AT5G39830.1
Length=1405
Score = 2226 bits (1205), Expect = 0.0
Identities = 1331/1392 (96%), Gaps = 7/1392 (1%)
Strand=Plus/Plus
Query 48 TCGACTGGTCTCAGAGTTTTCTCGAttttttttGGAAAGATGCAGGTAATAGCATCTTTC 107
||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 18 TCGACTGATCTCAGAGTTTTCTTGA-ATTTTGTGGAAAGATGCAGGTAATAGCATCTTTC 76
Query 108 TGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGT 167
| || |||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct 77 TCTTTGAAACCTAATGAGAATGAATTTGTGGGTCGACGACAACTTCTTTCCTCCGCCTGT 136
Query 168 TCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACT 227
|||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 137 TCCAGAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCAGTCAAGATTACT 196
Query 228 CAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGG 287
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 197 CGAGATTGGAAGTCGAATTTACATGAGTTAGCTATGAAAAGTGTCCCTTCGACGACAAGG 256
Query 288 AGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 316
Query 348 GCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTC 407
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 317 GCCTTAGCACTTGGTGATCCATCTGTTGCGACCGTTGAAGATGTTAGTCCACCTGTTTTC 376
Query 408 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACT 467
|||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||
Sbjct 377 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTCCAATTGTTTGAGAAAAACACT 436
Query 468 TATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 527
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TATTCCGTTGTCAACATATTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 496
Query 528 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTG 587
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 497 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGATGGACAGGGATACATCGTG 556
Query 588 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTT 647
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 557 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAACCCCGGGGATGTGGTT 616
Query 648 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTT 707
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 617 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAAAAGAACTTTGAAGGAAAACTTGTT 676
Query 708 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCC-GAAACTCTCCT 766
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||
Sbjct 677 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTAGATGC-CCCTGAAACCCTCCT 735
Query 767 GAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAAT 826
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 736 GAAACCGATTAAAGTTGGGCAGTCAAACTCTCTAAAGGTTGGGCAGCAGTGTTTAGCAAT 795
Query 827 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCG 886
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 796 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGGGTCATCAGCGGTCTTAACCG 855
Query 887 TGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCAT 946
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 856 TGACATATTTAGTCAAACCGGAGTGACCATTGGTGGTGGAATTCAAACAGATGCAGCCAT 915
Query 947 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 975
Query 1007 CACGGCCATTTTCACACAGACAGGAACATCTGCGGGTGTTGGATTTGCTATTCCGTCATC 1066
||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 976 CACGGCCATAGTCACACAGACAGGAACATCTGCGGGTGTCGGATTTGCAATTCCGTCATC 1035
Query 1067 AACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTAT 1126
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1036 GACTGTATTAAAGATTGTTCCTCAACTAATCCAATTCAGCAAAGTCCTTCGAGCTGGTAT 1095
Query 1127 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1155
Query 1187 TGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCG 1246
||||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||
Sbjct 1156 TGTCCTTCAGGTACCCGGAAATAGTCTAGCAGAAAAAGCTGGATTACATCCGACATCCCG 1215
Query 1247 GGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGT 1306
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1216 GGGTTTTGCTGGTAACATAGTACTTGGAGATATCATTGTTGCAGTTGATGACAAACCCGT 1275
Query 1307 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGAC 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGA- 1334
Query 1367 A-CTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCA-TTGGAAGAGAAA 1424
| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1335 ATCTTAAGATCAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCACTTG-AAGAGAAA 1393
Query 1425 AGTTCATGAAAA 1436
||||||||||||
Sbjct 1394 AGTTCATGAAAA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5