BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39850.1

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494005 jgi|Araly1|494005|fgenesh2_kg.7__3438__AT5G39850.1        1079    0.0  


> Ahg494005 jgi|Araly1|494005|fgenesh2_kg.7__3438__AT5G39850.1
Length=629

 Score = 1079 bits (584),  Expect = 0.0
 Identities = 614/629 (98%), Gaps = 0/629 (0%)
 Strand=Plus/Plus

Query  19   AGCAGCAGCAGCTATGGTTAACGTCAGATTCTACCGAAACTATGGGAAAACATTCAAGAA  78
            |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    AGCAGCAGCAGCTATGGTAAACGTCAGATTCTACCGCAACTATGGGAAAACATTCAAGAA  60

Query  79   GCCACGTCGTCCTTATGAGAAAGAGCGTCTTGATGCTGAGCTAAAGCTTGTTGGAGAATA  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   GCCACGTCGTCCTTATGAGAAAGAGCGTCTTGATGCTGAGCTAAAGCTTGTAGGAGAATA  120

Query  139  CGGTCTTCGTTGTAAGAGAGAGCTTTGGAGAGTTCAATATACACTTAGCAGAATCCGTAA  198
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  CGGTCTTCGTTGTAAGAGAGAGCTTTGGAGAGTTCAATATACACTTAGCCGAATCCGTAA  180

Query  199  TGCTGCAAGAGAACTCTTAACTCTTGATGAGAAGAATCCTCGTCGTATCTTTGAAGGTGA  258
            ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  181  TGCTGCAAGAGAACTTTTAACACTTGATGAGAAGAACCCTCGTCGTATCTTTGAAGGTGA  240

Query  259  AGCTCTTCTTAGGAGAATGAATCGATATGGTCTTCTTGATGAAACCCAGAACAAGCTTGA  318
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  AGCTCTTCTTAGGAGAATGAATCGATATGGTCTTCTTGATGAAAGCCAGAACAAGCTTGA  300

Query  319  TTATGTTCTTGCTTTGACTGTTGAGAATTTCCTTGAACGTCGTCTCCAAACTATTGTCTT  378
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  301  TTATGTTCTTGCTTTGACTGTTGAGAATTTCCTTGAACGTCGTCTTCAAACTATTGTCTT  360

Query  379  TAAGTCTGGTATGGCTAAGTCCATTCACCACGCTCGTGTCCTTATCCGACAAAGGCATAT  438
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  361  TAAGTCTGGTATGGCTAAGTCTATTCACCACGCTCGTGTCCTTATCCGACAAAGGCACAT  420

Query  439  CAGGGTTGGGAGGCAACTTGTGAACATTCCATCGTTTATGGTGAGAGTAGAGTCACAGAA  498
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  421  CAGGGTTGGGAGGCAACTTGTGAACATTCCATCGTTTATGGTGAGAGTAGAGTCGCAGAA  480

Query  499  GCACGTAGACTTTTCTCTAACCAGTCCATTCGGTGGTGGTCGACCTGGAAGAGTGAAGAG  558
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GCACGTTGACTTTTCTCTAACCAGTCCATTCGGTGGTGGTCGACCTGGAAGAGTGAAGAG  540

Query  559  AAGGAACGAGAGAGCCGGAGCTAAGAAAGCTTCTGGTGGTGATGGAGATGAGGATGATGA  618
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  AAGGAACGAGAGAGCTGGAGCTAAGAAAGCTTCTGGTGGTGATGGAGATGAGGATGATGA  600

Query  619  AGAGTGAAAAGTACCAAACCCTTaaaaaa  647
            ||||||||||||||||||||| |||||||
Sbjct  601  AGAGTGAAAAGTACCAAACCCCTAAAAAA  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32556971118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5