BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39860.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947820 jgi|Araly1|947820|scaffold_704049.1                        536    7e-152


> Ahg947820 jgi|Araly1|947820|scaffold_704049.1
Length=321

 Score =  536 bits (290),  Expect = 7e-152
 Identities = 311/321 (97%), Gaps = 2/321 (1%)
 Strand=Plus/Plus

Query  252  TTTCTTGCCACATTGTTGAACATGTCGAACAGAAGATCAAGGCAATCTTCAAGTGCTCCA  311
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  2    TTTCTTGCCACATTGTTGAACATGTCGAACAGAAGATCAAGACAATCTTCAAGTGCTCCA  61

Query  312  AGGATCTCCGATAATCAAATGATTGACCTCGTATCTAAGCTCCGTCAAATTTTGCCGGAG  371
            |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  62   AGGATCTCCGATGATCAAATGATTGACCTCGTAACTAAGCTCCGTCAAATTTTGCCGGAG  121

Query  372  ATTGGTCAACGACGTCGTTCTGATAAGGCATCAGCCTCGAAAGTATTGCAAGAGACATGC  431
            ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  122  ATTGGCCAACGACGTCGTTCTGATAAGGTATCAGCGTCGAAAGTATTGCAAGAGACATGC  181

Query  432  AATTACATACGAAATTTGAACAGAGAAGTTGACAATCTGAGCGAGCGTTTGTCTCAGCTT  491
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  182  AATTACATACGAAATTTGAACAGAGAAGTTGACAATCTCAGCGAGCGTTTGTCTCAGCTT  241

Query  492  CTCGAATCTGTCGATGAAGATAGCCCTGAAGCCGCCGTTATTAGAAGCCTACTCATGTAA  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  CTCGAATCTGTCGATGAAGATAGCCCTGAAGCCGCCGTTATTAGAAGCCTACTCATGTAA  301

Query  552  TCttttttgttctttt-gttt  571
            |||||||| || |||| ||||
Sbjct  302  TCTTTTTT-TTGTTTTTGTTT  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5