BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39865.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947807 jgi|Araly1|947807|scaffold_704036.1 822 0.0
Ahg484655 jgi|Araly1|484655|fgenesh2_kg.5__647__AT3G28850.1 303 2e-81
> Ahg947807 jgi|Araly1|947807|scaffold_704036.1
Length=1295
Score = 822 bits (445), Expect = 0.0
Identities = 520/554 (94%), Gaps = 13/554 (2%)
Strand=Plus/Plus
Query 1092 CAAAAGAAAGACTTTAGGTAAAGAAAGAGTG-GTACTTTACTTCACAAGCCTTAGAGGTA 1150
||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 744 CAAAAGAAAGAGTTTAGGTAAAGAAAAAGTGAG-ACTTTACTTCACAAGCCTTAGAGGTA 802
Query 1151 TAAGGAAAACATATGAAGACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTC 1210
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TAAGGAAGACATATGAAGACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTC 862
Query 1211 GGATCGATGAGCGCGATGTATCGATGCATTCGGGTTTCAAAGATGAGCTGAAGAAGCTCT 1270
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 863 GGATCGATGAGCGCGATGTATCAATGCATTCGGGATTCAAAGATGAGCTGAAGAAGCTAT 922
Query 1271 TGGAGGGTAAATTCAACAACGGCGTTGGAATAACCCTGCCTAGAGTTTTCTTGGGGAACA 1330
|||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 923 TGGAGGAAAAATTTAACAATGGCGTTGGAATAACACTGCCTAGAGTTTTCTTGGGGAACA 982
Query 1331 AGTATCTTGGCGGAGTAGAGGAGATTAAGAAGTTGAATGAAAATGGGGA-ACTTGAAAAG 1389
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 983 AGTATCTTGGCGGAGTGGAGGAGATTAAGAAGTTGAATGAAAAT-GGGACACTTGAAAAG 1041
Query 1390 CTGATAAAAGACTGTGAAATGGTTGAAGATGGCTCACCGGGTTTTGGTAACGAATGTGAG 1449
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1042 CTGATAAAAGACTGCGAAATGGTTGAAGATGGCTTAACGGGTTTTGGTAACGAATGTGAG 1101
Query 1450 GCTTGTGGAGATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAACTTTAC 1509
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1102 GCTTGTGGAGATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAAATTTAC 1161
Query 1510 CACGAAGGCGAAGAAGAAGACGAAG--GA-G------TTACAGAGTATGGATTTCAAAGA 1560
|| ||||||||||||||||| |||| || | |||| || |||||||||||||||
Sbjct 1162 CATGAAGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTACGGACTATGGATTTCAAAGA 1221
Query 1561 TGTCCATATTGTAATGAGAATGGATTGATCAGATGTCATGTGTGTTGTGAGTGAGTCAAT 1620
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1222 TGTCCATATTGTAATGAGAATGGATTGATCAGATGTCCTGTGTGTTGTGAGTGAGTCAAT 1281
Query 1621 ATACAAAACTCAGT 1634
||||||||||||||
Sbjct 1282 ATACAAAACTCAGT 1295
Score = 553 bits (299), Expect = 2e-156
Identities = 324/336 (96%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 412 TTGCTCTGTTTTCGATTTGATTTGATTAAAATGGGTTGTGCGAGCTCGAAGAATCGAAAC 471
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TTGCTCTGTTTTCGACTTG-GTTGATTAAAATGGGTTGTGCGAGCTCGAAGAATCGGAAT 60
Query 472 CGTTGCCGTAATTGCAAAGGAGGATTATCGCCGGTGATTGTGCCACGAAGCTATTCAATG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTTGCCGTAATTGCAAAGGAGGATTATCGCCGGTGATTGTGCCACGAAGCTATTCAATG 120
Query 532 CACGTTCATCATCCAGCACAACACACCGGCGATAGTTATCACACGGTGGCTCTCACTTCC 591
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CACGTTCATCATCCAGCACAACACACCGGCGATAGTTATCACACTGTGGCTCTCACTTCC 180
Query 592 TCCACAATCGGATCTCTTAGTCTTTGTGATTCTTCTCTCAGGCATTTTCACAAACACTTG 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCACAATTGGATCTCTTAGTCTTTGTGATTCTTCTCTCAGGCATTTTCACAAACACTTG 240
Query 652 GAAGACTCTTTTTACAAGCAACGCGTTTCCGACCAAATGGGTGAGGAGACGCTAATCTCC 711
||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 241 GAAGACTCTATTTACAAGCAACGGGTTTCCGATCAAATGGGTGAGGAGAAGCTAATCTCC 300
Query 712 GGTAATGGGTTTCTTCACGGCGATGAAGAGAA-GAT 746
|||||||||||||||||||||||||||||||| |||
Sbjct 301 GGTAATGGGTTTCTTCACGGCGATGAAGAGAATGAT 336
Score = 508 bits (275), Expect = 4e-143
Identities = 325/350 (93%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 738 AGAGAAGATGAATTTGGATTTGCAAGCTAAGGTTATCGAAGCTAAGGTGTGGTCAAGTAC 797
|||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 360 AGAGAAGATGAATTTGGATTTGCAAGCTAAGGTTATTGAAGCTAGGGTTTGGTCAAGTAT 419
Query 798 GATAAACGAGAAAATCCCTAAGATTGTGGCTAAAACTCCAATAGTGACGCCTCCTGGAGA 857
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 420 GATAAACGAGAAAATCCCTAAGATTGTGCCTAAAACTCCAATAGTGACACCTCCTGGAGA 479
Query 858 GCCAGAGACGATCAATACATGGGAATTGATGGAAGGTCTTGAAGATGTTAGTCCTTTACG 917
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCCAGAGACGATCAATACGTGGGAATTGATGGAAGGTCTTGAAGATGTTAGTCCTTTACG 539
Query 918 ATCACCGAATCACTTGAGGAGCTTCTCCTTTGATTTTGTTCGTATCCAACCTAGTCATGA 977
|||||||||||||| ||| |||||||| |||||| |||||||||||||||||| ||||||
Sbjct 540 ATCACCGAATCACTCGAGAAGCTTCTCGTTTGATGTTGTTCGTATCCAACCTAATCATGA 599
Query 978 TCATGATCATGATGTTGCTGTTTCCTTTGATCTTCCTAAATCAAGGTTTCATGAGAATGT 1037
| ||||| |||||||| |||||| ||||||| | |||||||||||||||||||||||||
Sbjct 600 TGATGATGTTGATGTTGATGTTTCGTTTGATCGTGCTAAATCAAGGTTTCATGAGAATGT 659
Query 1038 TAAGTCCAGTTGCAGAGTTGATGATTTGGATCCACCTGATATAGTTTCAA 1087
||||||| | ||||||||||||||||||| ||| |||| ||||||||||
Sbjct 660 GAAGTCCAATAGCAGAGTTGATGATTTGGAGCCATCTGAGATAGTTTCAA 709
> Ahg484655 jgi|Araly1|484655|fgenesh2_kg.5__647__AT3G28850.1
Length=1471
Score = 303 bits (164), Expect = 2e-81
Identities = 346/433 (80%), Gaps = 16/433 (4%)
Strand=Plus/Plus
Query 1108 GGTAAAGA-AAGAGTGGTACTTTACTTCACAAGCCTTAGAGGTATAAGGAAAACATATGA 1166
|||||||| || |||| |||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 769 GGTAAAGAGAA-AGTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACATATGA 827
Query 1167 AGACTGCTGCAATATCCGGATAATACTGAAA-AGCTTAGGAATTCGGA-TCGATGAGCGC 1224
||| ||||| || | ||||| ||||| ||| ||| | |||||| || | ||||||||
Sbjct 828 AGAGAGCTGCGATGTTCGGATTATACT-AAAGAGCCTCGGAATT-AGAGTGGATGAGCGA 885
Query 1225 GATGTATCGATGCATTCGGGTTTCAAAGATGAGCTGAAGAAGCTCTTGGAGGG-TAAATT 1283
|||||||||||||||||||||||||||| ||| ||||| || | || | ||| ||| ||
Sbjct 886 GATGTATCGATGCATTCGGGTTTCAAAGGCGAGTTGAAGGAGTTATTAG-GGGATAAGTT 944
Query 1284 CAACAACGGCGTTGGAATAACCCTGCCTAGAGTTTTCTTGGGGAAC-AAGTATCTTGGCG 1342
|||||| |||||||| || || | ||||||||||||||||| || |||||| | || |
Sbjct 945 CAACAATGGCGTTGGGATTACTTTACCTAGAGTTTTCTTGGG-AAGGAAGTATATCGGGG 1003
Query 1343 GAGTAGAGGAGATTAAGAAGTTGAATGAAAATGGGGAA-CTTGAAAAGCTGATAAAAGAC 1401
||| |||||||||| |||||| || ||| |||| || || || ||||| | ||| |
Sbjct 1004 GAGCAGAGGAGATTCGGAAGTTAAACGAAGATGGA-AAGCTCGAGAAGCTTCTTGAAGGC 1062
Query 1402 TGTGAAATGGTTGAAGATGGCTCACCG-GGTTTTGGT-AACGAATGTGAGGCTTGTGGAG 1459
|| || | ||| ||||| | || ||| |||| || ||||| |||||||||||||
Sbjct 1063 TGCGAGAGGGTGGAAGAAAAC-CAAAATGGTAATGGTCAA-GAATGCGAGGCTTGTGGAG 1120
Query 1460 ATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAACTTTACCACGAAGGCG 1519
|||| |||||||||||||||||||||||||||| ||||||||| | ||| | ||| |
Sbjct 1121 ATGTAAGGTTTGTGCCGTGTGAGACATGTTCAGGGAGCTGCAAAGTGTACTATGAATATG 1180
Query 1520 AAGAAGAAGACGA 1532
|||| ||||||||
Sbjct 1181 AAGACGAAGACGA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5