BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39870.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493997 jgi|Araly1|493997|fgenesh2_kg.7__3430__AT5G39870.1 994 0.0
> Ahg493997 jgi|Araly1|493997|fgenesh2_kg.7__3430__AT5G39870.1
Length=827
Score = 994 bits (538), Expect = 0.0
Identities = 686/757 (91%), Gaps = 12/757 (2%)
Strand=Plus/Plus
Query 1 GTAAAACAAAATTGTCAATCTATGTTTCTCATACAATGCCTAGATTTCAACATTTTCTCT 60
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||
Sbjct 1 GTAAAACAAAATTGTCAATCTACGTTTCTCATACAATGCCAAGATTTCAACTTTTTTTCT 60
Query 61 GTTTTACCATCCTTGTTGCAACCATAACCTTTTTCAAGGTAGCTTCAGCTCACGTGAAAA 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 GTTTTACCATCCTTGTTGCAACCATAACCTTCTTCAATGTAGCTTCAGCTCACGTGAAAA 120
Query 121 TTAAACCTGCTTTACCGCAGATTGAAGATCCATTGACCGTAAAAGATGTCGAGTCTTATA 180
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTAAACCTGCTTTACCACAGATTGAAGATCCATCAACCGTAAAAGATGTCGAGTCTTATA 180
Query 181 CCATAAAAGTTGTGACAACGTTCCTGGTTGAGCTTGAGAAGGAATGCCCCAAAACAGAGA 240
|||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 181 CCATTAAAGTTGTGACAACCTTCCTGGTTGACCTCGAGAAGGAATGCCCCAAAACAGAGA 240
Query 241 AATTTAAGGTATTTTTCGAAAAACTTAAGGCGTATTCCAAGTACTTGTGCCC-AGTCTCT 299
| |||||||| || |||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 241 AGTTTAAGGTCTTCTTCGAAAAACTTAAGGCGTATTCCAAGTACGTGTGCCCGA-TCTCT 299
Query 300 AAAGCAAAAGGCTACAAATCTGACATGAAGGCCAAGGCCGGTAGCCTTTTCGAGGCAATG 359
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 AAAGCAAAAGGCTATGAATCTGACATGAAGGCCAAGGCTGGTAGCCTTTTCGAGGCAATG 359
Query 360 TCAGCCCTCA-TCTCCGTTAAACACAGATCTAAAGAAGGATCAGTGAATAAGAGTCTACA 418
||||| ||| | ||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 360 TCAGCTCTCGGT-TCCGTTAAAAACAGATCTAGAGAAGGATCAGTGACTAAGAGTCTACA 418
Query 419 ACGGGAAAAAATGGAAGCCATGAATACCATAAATTTACTGCAATCCGTTGGTGAAAAGAT 478
||||| ||||| ||| |||||||||||| |||| |||||||||||| ||||||| |||||
Sbjct 419 ACGGGGAAAAACGGAGGCCATGAATACCGTAAAATTACTGCAATCCATTGGTGAGAAGAT 478
Query 479 TGCGGGTGGGAGAAGTAACAAAACAGAGACTAAT-GGAGTCGCGAAACTAACTGTAGAAC 537
|||||||||| ||| |||||||||||||| ||| ||| ||||||||||||| |||| |
Sbjct 479 TGCGGGTGGGCGAAATAACAAAACAGAGA-TAAACGGAACCGCGAAACTAACTATAGAGC 537
Query 538 AACAGAAAGAAATGAAAGATGGAATCTTGAAATGGCTTCAAGTAATTACTCGAATCGTAA 597
|||| |||||||| |||||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 538 AACAAAAAGAAATCAAAGATGGGATATTGAAATGGCTTCAAGTAATTACTCGAATCGCAA 597
Query 598 AGACAAACGTAGAAATAAATTTAAAATCTTCatcaaaatctcaaacgacacaagaaagca 657
|||||| || |||||| || | ||||||||||| |||||||||||| | ||||| ||||
Sbjct 598 AGACAACCGAAGAAATCAACTCAAAATCTTCATTAAAATCTCAAACAATGCAAGAGAGCA 657
Query 658 aagaagaaaaatcttcaacacaaacacaaatcaaaagaagaagtgaaagagaaTATGCTC 717
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 658 GAGAAGAAAAATCTTCAACACAAA------TCAAAAGAGGAAGTCAAAGAGAAAATGCTC 711
Query 718 AAATCACAGCGTTACCGAGAGGTAGCCGCGTGACAAA 754
|||||||||||||||| ||||||||||||||||||||
Sbjct 712 AAATCACAGCGTTACCTAGAGGTAGCCGCGTGACAAA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5