BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39880.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330513 jgi|Araly1|330513|fgenesh1_pm.C_scaffold_7002740 1435 0.0
Ahg484650 jgi|Araly1|484650|fgenesh2_kg.5__642__AT3G28750.1 93.5 4e-18
> Ahg330513 jgi|Araly1|330513|fgenesh1_pm.C_scaffold_7002740
Length=1098
Score = 1435 bits (777), Expect = 0.0
Identities = 1002/1108 (90%), Gaps = 26/1108 (2%)
Strand=Plus/Plus
Query 79 ATGGCAAGGATCTCTCTGTTGTTCTCATTAGCCTTTGTTTTAGCCCTCGGCTCAGTGTTC 138
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 1 ATGGCAAGGATCTCTCTGTTGTTCTCTTTAGCCTTTGTTCTAGCCCTCGGCTCATTGTTC 60
Query 139 CTTTCCGTTTCCGGTCACGCTCCTCCCGTGACACCGAGAAAATCAGCATGTCCAAAAACA 198
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 CTTTCCGTTTCCGGTCACGCTCCTCCCGTGACACCGAGAAAACCGGCATGTCCAAAAACC 120
Query 199 GTATCCGAACTCCAGACCTTACCTTTTACCGAAATCACTGAGATCCTAAACCGAAAAGAG 258
||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 121 GTATCTGAGCTCCAGACCTTACCTTTTGCCGAAATCACTGAGATCCTAAACCGGAAAGAG 180
Query 259 CGGTCTGCCCCGAAAACCCCTGAGTTCAAGGCAATGTTCACAATGTGCAAAGGCTACGTG 318
|||| ||||||||| |||| ||||||| ||| ||||||| |||||||||||||||| |||
Sbjct 181 CGGTTTGCCCCGAACACCCTTGAGTTCGAGGTAATGTTCTCAATGTGCAAAGGCTATGTG 240
Query 319 ACATACCTCGAGAGCCTCTACAAGTTTGAGAATCCCATTGTAGATGTTTTAGGAATTGCC 378
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCATACCTTGAGAGCCTCTATAAGTTTGAGAATCCCATTGTAGATGTTTTAGGAATAGCC 300
Query 379 AAGACCAGATACACCCTGATGAACAAGGCAATTCTTGCTGCGCAAGCTAGTGTTGGCGGT 438
||| |||||||| || | |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAGGCCAGATACGCCTTAATGACCAAGGCAATTCTTGCTGCACAAGCTAGTGTTGGCGGT 360
Query 439 AAAGTCAATAAGAAAACTTCTTTGAAGCTAAAGAAAAGCTATGCTGATTTGACAAAAGGG 498
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 361 AAGGTCAATAAGAAAACTTCTTTAAAGCTAAAGAAAAGCTACGCTGATTTGACAAAAGGG 420
Query 499 TTTCTCC-GAATTAAAGAAACTATTGTAAAGATATCAGCCAAACATGATTACCAGGCTGA 557
||||||| || |||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 421 TTTCTCCAGA-TTAAAGAAACGATTGTCAAGATATCAGCCAAACATGAATACAAGGCTGA 479
Query 558 TGCAAAGATCACGGCTCACGAAGCGAAAAAGCTCAATCACGCTATGATAAGTTTCAAGAA 617
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 TGCTAAGATCACGGCTCACGAAGCGAAAAAGCTCAATCACGCTATGATAAATTTCAAGAA 539
Query 618 TTCGATCAATGCTTTCATGAATGTTGTTAACAATCTTGAGAATAAGAAGATGAAGAAAAT 677
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 TTCGATTAATGCTTTCATGAATGTGGTTAACAATCTTGAGAAGAAGAAGATGAAGAAAAT 599
Query 678 AGGTCTTCACGCAAGAGCACTTGGAGAAAACCGTGAGAAAGTAAGAAATGCTTTCAAAAG 737
|||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||
Sbjct 600 AGGTCTTCACGCAAGAGCACTTGGAGAAAAACGTGATAGAGTACGAAATGCTTTCAAAAG 659
Query 738 TTTTTTCAAGAAGTTTGGTGGTTATCTAGGAGGTAAAACTCACCGAAGAGAACTAACTGA 797
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 660 TTTTTTCAATAAGTTTGGTGGTTATCTAGGAGGTAAAACTCATGGAAGAGAACTAACAGA 719
Query 798 AGCTAAATACAACGCGGATTCTCACGTTGGTGCTGACGTAAAAGGATTTGAATCCATTAT 857
||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| ||| |
Sbjct 720 AGCTAAATACAGCGCCAATTCTCATGTTGGTGCTGACGTCAAAGGATTTGAATCTATTTT 779
Query 858 CGATAAGTTTTCTGACTTCTTTAATGGTTATCTTGGAGGTCA--C-C---GAAGAGAACT 911
||||| ||||||| |||||||| ||||||||| |||||||| | | ||||||||||
Sbjct 780 AGATAAATTTTCTGGCTTCTTTAGTGGTTATCTCGGAGGTCAAACTCACCGAAGAGAACT 839
Query 912 CTTTTACCAAGTACCAG-C--AG-GCGAATTCGCCGATGAAAAAATTGCTATTCATGCTT 967
|||| ||||| |||||| | || || || |||||||||||||||||||| |||||||
Sbjct 840 CTTTAACCAACTACCAGGCGTAGAGC-AA---GCCGATGAAAAAATTGCTATCCATGCTT 895
Query 968 CTTTGGACGCCAAA-GCTCACGGAAGAAAAGG--AATTCGAAGGGAACTATATGCTCAAG 1024
|||||| | | ||| |||| |||||||| || || |||| |||||||||||||||
Sbjct 896 CTTTGG-CACAAAAAGCTCGCGGAAGAAGAGCTCAAA--GAAGAGAACTATATGCTCAAT 952
Query 1025 CTCCTTTATTTAAAAATTTCTTCAATGTTGGATTTGGAGGTAAAGCTCAATACGATGCCG 1084
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 CTCCGTTATTTAAAGATTTCTTCAATGTTGGATTTGGAGGTAAAGCTCAATATGATGCCG 1012
Query 1085 CGGGAAAGATGAAAGTCGCCGGAGATGATGGATTCAGGTCACTGAACAGGGCACATGTT- 1143
|||| |||||||||||||||||| | |||||||||||| ||||||| ||| ||||| |
Sbjct 1013 CGGGGAAGATGAAAGTCGCCGGACAAGATGGATTCAGGGCACTGAAGAGGCCACAT-TAC 1071
Query 1144 AAACATTTTGCTTCGACAGAAG-CATAA 1170
||||||||||||||||| |||| |||||
Sbjct 1072 AAACATTTTGCTTCGAC-GAAGGCATAA 1098
> Ahg484650 jgi|Araly1|484650|fgenesh2_kg.5__642__AT3G28750.1
Length=1289
Score = 93.5 bits (50), Expect = 4e-18
Identities = 70/79 (89%), Gaps = 4/79 (5%)
Strand=Plus/Plus
Query 51 TTTTT-GCCTTGCCATAAGCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCATTAG 109
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 45 TTTTTAACCTTGCCAT---CAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAG 101
Query 110 CCTTTGTTTTAGCCCTCGG 128
|||| ||| ||||| ||||
Sbjct 102 CCTTAGTTCTAGCCATCGG 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5