BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39890.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891728 jgi|Araly1|891728|Al_scaffold_0007_3714 1158 0.0
> Ahg891728 jgi|Araly1|891728|Al_scaffold_0007_3714
Length=855
Score = 1158 bits (627), Expect = 0.0
Identities = 783/855 (92%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 151 ATGGGAACTGATACAGTTATGTCTGGACGAGTAAGGAAAGATCTATCAAAAACGAATCCA 210
||| |||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 ATGCGAACTGGTACAGTTGTGTCTGGACGAGTAAGTAAAGATCTCTCAAAAACGAATCCA 60
Query 211 AATGGGAATATTCC-T-G---A-GAA-TC----G-TTCT-A-A-T--T-C-A---C--GT 246
|||||||||||||| | | | ||| || | |||| | | | | | | | ||
Sbjct 61 AATGGGAATATTCCGTTGGTGACGAAATCTATCGCTTCTGAGAATCGTTCTAGTTCACGT 120
Query 247 AAGAAGATCCAACGACGGAGTAAGAAAACCCTAATCTGTCCGGTTCAAAAACTATTCGAT 306
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 AAGAAGATCCAACGACGGAGCCAGAAAACCCTAATCTGTCCGGTTCAGAAACTGTTCGAT 180
Query 307 ACTTGTAAGAAAGTTTTCGCTGATGGCAAATCTGGTACCGTCCCTTCTCAAGAAAACATT 366
||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 181 ACTTGTAAGAAAGTTTTCGCTAATGGCAAATCTGGAACCGTCCCTTCTGAAGAAAACATT 240
Query 367 GAGATGCTTCGAGCCGTTTTGGATGAAATCAAGCCTGAGGATGTTGGCGTAAATCCTAAG 426
||||||||||||||||||||||| | ||||| ||||||||||||||| || | |||||||
Sbjct 241 GAGATGCTTCGAGCCGTTTTGGACGTAATCACGCCTGAGGATGTTGGTGTGAGTCCTAAG 300
Query 427 ATGTCGTATTTTCGATCTACAGTGACCGGACGATCTCCGTTAGTGACGTATCTTCACATC 486
||| ||| ||||||||||| || ||||||||| |||||| ||||||||||||||||||||
Sbjct 301 ATGCCGTTTTTTCGATCTAAAGAGACCGGACGTTCTCCGCTAGTGACGTATCTTCACATC 360
Query 487 TATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCTCCATCTGGTGTTATCCCT 546
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 361 TATGCATGTCATAGATTCTCGATTTGCATTTTCTGTTTACCACCATCTGGTGTAATCCCT 420
Query 547 CTTCACAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATC 606
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCATAATCACCCGGAGATGACTGTGTTTAGTAAGCTCTTGTTTGGTACAATGCATATC 480
Query 607 AAATCCTATGATTGGGTCCCTGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAA 666
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAATCCTATGATTGGGTTGCAGATTCTCCCCAGCCGAGTTCAGATACTCGTTTGGCGAAA 540
Query 667 GTGAAAGTAGATTCGGACTTTACCGCACCTTGTGATACTTCTATACTGTACCCGGCTGAT 726
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||
Sbjct 541 GTGAAAGTAGATTCGGATTTTACGGCACCTTGTGATACTTCTATACTCTATCCGGCTGAT 600
Query 727 GGAGGGAATATGCATTGCTTCACCGCGAAAACGGCTTGCGCGGTTCTTGATGTTATTGGT 786
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 601 GGAGGGAATATGCATTGCTTCACCGCGAAAACAGCTTGTGCGGTTCTTGATGTTCTTGGT 660
Query 787 CCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTCCATACTCTGATCCCGCAGGACGTCATTGTACTTACTATTTCGATTATCCGTTCTCT 720
Query 847 AGTTTCTCGGTCGATGGAGTCGTGGTTGCCGAGGAGGAGAAGGAAGGCTATGCATGGTTG 906
||||| || || |||||||||| |||||| || || ||||||||||||||||||||||||
Sbjct 721 AGTTTTTCAGTTGATGGAGTCGCGGTTGCGGAAGAAGAGAAGGAAGGCTATGCATGGTTG 780
Query 907 AAGGAGAGGGAAGAGAAGCCAGAGGATTTAACGGTTACTGCATTGATGTATAGTGGACCA 966
||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 781 AAGGAGAGGGAAGAGGAGCCAGAGGATTTGACGGTTAGTGCAATGATGTATAGTGGACCA 840
Query 967 ACCATCAAAGAATGA 981
|||||||||||||||
Sbjct 841 ACCATCAAAGAATGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5