BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39910.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891726 jgi|Araly1|891726|Al_scaffold_0007_3712 1236 0.0
> Ahg891726 jgi|Araly1|891726|Al_scaffold_0007_3712
Length=1233
Score = 1236 bits (669), Expect = 0.0
Identities = 786/843 (93%), Gaps = 6/843 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAATTTCGTAATGTTCTTAAATTTTCTTCTTTCTTTAACTGTCTTCCACACTTTT 60
|||||||||| || |||||||| || |||| | || ||||||||| ||||||||| ||||
Sbjct 1 ATGGCAAATTCCGCAATGTTCTCAACTTTTATCCTCTCTTTAACTCTCTTCCACATTTTT 60
Query 61 CAGTCAGTTCAGTCTCATTTTTCTCTCTATAATGATAA-CAACA-TTTTCAATGTTCTTA 118
|||| |||||||||||| | |||||| ||| |||| || || | |||| |||||||| |
Sbjct 61 CAGTTAGTTCAGTCTCACTATTCTCTTTATCATGA-AAGTAAAAGTTTT-AATGTTCTCA 118
Query 119 ATTATGGAGCAATTGGAGATGGATTTTCTGACGATTCAAAGGCTTTCAAAGATGCATGGG 178
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 119 ATTATGGAGCAATTGGAGATGGATTTTCTGACGATTCAAAGGCATTCAAGGATGCATGGG 178
Query 179 AAGACACATGCAATTACATTGGATCTGAATCAATTATGGAAATTCCTGAAGGAAACACAT 238
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 179 AAGACACATGCAATTACATTGGATCTCAATCAACTATGGAAATTCCTGAAGGATACACAT 238
Query 239 TTCTTCTGCAACCTATTGAGTTTCATGGCCCTTGTAAATCCAAGAAAATCATTTTATCGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCTTCTGCAACCTATTGAGTTTCATGGCCCTTGTAAATCCAAGAAAATCATTTTATCGA 298
Query 299 TCAGTGGAAACTTAATTGCTCCCGAATCTCCATATGAATGGAAATGCAACAAAGATGATT 358
||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||
Sbjct 299 TCAGTGGAAACTTAATTGCTCCCGAATCTCCATATGAATGGGAATGTAAGAAAGATCATT 358
Query 359 GTCATCAGTGGATCGAATTCGCACATATAAATGGACTTTATATCGATGGTCATGGCTTGA 418
||||| | ||||||||||||| ||||||||||||||| |||| |||||||||| | |
Sbjct 359 GTCATAAATGGATCGAATTCGGTCATATAAATGGACTTCATATTAATGGTCATGG-TACA 417
Query 419 -TGGCATGTCTCAAGAGACCAAGGGGTGTGGTTATATCACATTCGAGTAATGTGCATATA 477
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CTTGCATGTCTCAAGAGACCAAGGGGTGTGGTTATATCGCATTCGAGTAATGTGCATATA 477
Query 478 AGCAACATTATGGTGAAGGACAGTCCAAATTTTCAAATGTCGTTGGAAGATTCGAAATGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 AGCAACATTATGGTGAAGGACAGTCCAAATTTTCAAATGTCGTTGGAAGATTCAAAATGG 537
Query 538 GTTATTGTTAAGCAACTCACCATAACCGCTGATGGTGATAGCCCTAACACTGATGGCATT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTATTGTTAAGCAACTCACCATAACCGCTGATGGTGATAGCCCTAACACTGATGGCATT 597
Query 598 CACATTCAACGTTCTCAGAATGTTATCGTATACGATAGTAACATTCGTACAGGTGATGAT 657
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 598 CACATTCAACGTTCTCAGAATGTTATCGTATACGATAGTAATATCCGTACAGGTGATGAT 657
Query 658 TGTATATCTATTGGTGATGGTTCGAAATACATTAATATATCACGGATCTCATGTGGTCCA 717
||||||||||||||||| || || |||||| ||||||||||||| ||||||||||||||
Sbjct 658 TGTATATCTATTGGTGACGGCTCAAAATACGTTAATATATCACGAATCTCATGTGGTCCG 717
Query 718 GGGCATGGAATAAGTATCGGAAGCTTAGGTCGATATGGAACCAAGGAAACGGTCGAAAAT 777
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 718 GGGCATGGAATAAGTATCGGAAGCTTAGGTCGATATGGAACCAAAGAAACAGTGGAAAAT 777
Query 778 GTTGTTGTTCGAGATTGTACTTTTAGAGAAACAACTAATGGGGTTAGAATCAAGACATGG 837
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTGTTGTTAGAGATTGTACCTTTAGAGAAACAACTAATGGGGTTAGAATCAAGACATGG 837
Query 838 CAG 840
|||
Sbjct 838 CAG 840
Score = 420 bits (227), Expect = 1e-116
Identities = 261/277 (94%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 846 AGCTGTGGAGATCAAGAATGTAATGTTCAACCACATACATGGAACATCAATCAAGAAACC 905
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 960 AGCTGTGGAGATCAAGAATGTAATGTACAATCACATACATGGAACATCAATCAAGAAACC 1019
Query 906 CTTTGTGCAACTCCTATGCAGCAAATCAGTCCCATGTAGAGATATATTCATGAACGATAT 965
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 CTTTGTGCAACTCCTATGCAGCAAATCAGTCCCATGTAGAGGTATATTCATGAACGATAT 1079
Query 966 TAACATTCACGACGAAAACGAAGAGGAAGAAAAGAAATATCATAAATCATTGTCTCGCCA 1025
||||||| | ||||||||||||| |||||| ||||||| ||||||||||||||| ||
Sbjct 1080 AAACATTCGCAACGAAAACGAAGAAGAAGAAGAGAAATACCATAAATCATTGTCT---CA 1136
Query 1026 CGATGATCATCCTTCTGCTGAATGCATCAATGTTAAAGGTGAATCTAATGGTGTAATGAA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TAATGATCATCCTTCTGCTGAATGCATCAATGTTAAAGGTGAATCTAATGGTGTAATGAA 1196
Query 1086 GCCAAAACTAGCTTGCTTGGAATCCAAAAGACATTGA 1122
||||||||||| ||||||||||| |||||||||||||
Sbjct 1197 GCCAAAACTAGGTTGCTTGGAATTCAAAAGACATTGA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5