BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39910.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg891726 jgi|Araly1|891726|Al_scaffold_0007_3712 1236 0.0 > Ahg891726 jgi|Araly1|891726|Al_scaffold_0007_3712 Length=1233 Score = 1236 bits (669), Expect = 0.0 Identities = 786/843 (93%), Gaps = 6/843 (1%) Strand=Plus/Plus Query 1 ATGGCAAATTTCGTAATGTTCTTAAATTTTCTTCTTTCTTTAACTGTCTTCCACACTTTT 60 |||||||||| || |||||||| || |||| | || ||||||||| ||||||||| |||| Sbjct 1 ATGGCAAATTCCGCAATGTTCTCAACTTTTATCCTCTCTTTAACTCTCTTCCACATTTTT 60 Query 61 CAGTCAGTTCAGTCTCATTTTTCTCTCTATAATGATAA-CAACA-TTTTCAATGTTCTTA 118 |||| |||||||||||| | |||||| ||| |||| || || | |||| |||||||| | Sbjct 61 CAGTTAGTTCAGTCTCACTATTCTCTTTATCATGA-AAGTAAAAGTTTT-AATGTTCTCA 118 Query 119 ATTATGGAGCAATTGGAGATGGATTTTCTGACGATTCAAAGGCTTTCAAAGATGCATGGG 178 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 119 ATTATGGAGCAATTGGAGATGGATTTTCTGACGATTCAAAGGCATTCAAGGATGCATGGG 178 Query 179 AAGACACATGCAATTACATTGGATCTGAATCAATTATGGAAATTCCTGAAGGAAACACAT 238 |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| Sbjct 179 AAGACACATGCAATTACATTGGATCTCAATCAACTATGGAAATTCCTGAAGGATACACAT 238 Query 239 TTCTTCTGCAACCTATTGAGTTTCATGGCCCTTGTAAATCCAAGAAAATCATTTTATCGA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTCTTCTGCAACCTATTGAGTTTCATGGCCCTTGTAAATCCAAGAAAATCATTTTATCGA 298 Query 299 TCAGTGGAAACTTAATTGCTCCCGAATCTCCATATGAATGGAAATGCAACAAAGATGATT 358 ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||| Sbjct 299 TCAGTGGAAACTTAATTGCTCCCGAATCTCCATATGAATGGGAATGTAAGAAAGATCATT 358 Query 359 GTCATCAGTGGATCGAATTCGCACATATAAATGGACTTTATATCGATGGTCATGGCTTGA 418 ||||| | ||||||||||||| ||||||||||||||| |||| |||||||||| | | Sbjct 359 GTCATAAATGGATCGAATTCGGTCATATAAATGGACTTCATATTAATGGTCATGG-TACA 417 Query 419 -TGGCATGTCTCAAGAGACCAAGGGGTGTGGTTATATCACATTCGAGTAATGTGCATATA 477 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 418 CTTGCATGTCTCAAGAGACCAAGGGGTGTGGTTATATCGCATTCGAGTAATGTGCATATA 477 Query 478 AGCAACATTATGGTGAAGGACAGTCCAAATTTTCAAATGTCGTTGGAAGATTCGAAATGG 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 478 AGCAACATTATGGTGAAGGACAGTCCAAATTTTCAAATGTCGTTGGAAGATTCAAAATGG 537 Query 538 GTTATTGTTAAGCAACTCACCATAACCGCTGATGGTGATAGCCCTAACACTGATGGCATT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTTATTGTTAAGCAACTCACCATAACCGCTGATGGTGATAGCCCTAACACTGATGGCATT 597 Query 598 CACATTCAACGTTCTCAGAATGTTATCGTATACGATAGTAACATTCGTACAGGTGATGAT 657 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 598 CACATTCAACGTTCTCAGAATGTTATCGTATACGATAGTAATATCCGTACAGGTGATGAT 657 Query 658 TGTATATCTATTGGTGATGGTTCGAAATACATTAATATATCACGGATCTCATGTGGTCCA 717 ||||||||||||||||| || || |||||| ||||||||||||| |||||||||||||| Sbjct 658 TGTATATCTATTGGTGACGGCTCAAAATACGTTAATATATCACGAATCTCATGTGGTCCG 717 Query 718 GGGCATGGAATAAGTATCGGAAGCTTAGGTCGATATGGAACCAAGGAAACGGTCGAAAAT 777 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 718 GGGCATGGAATAAGTATCGGAAGCTTAGGTCGATATGGAACCAAAGAAACAGTGGAAAAT 777 Query 778 GTTGTTGTTCGAGATTGTACTTTTAGAGAAACAACTAATGGGGTTAGAATCAAGACATGG 837 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 778 GTTGTTGTTAGAGATTGTACCTTTAGAGAAACAACTAATGGGGTTAGAATCAAGACATGG 837 Query 838 CAG 840 ||| Sbjct 838 CAG 840 Score = 420 bits (227), Expect = 1e-116 Identities = 261/277 (94%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 846 AGCTGTGGAGATCAAGAATGTAATGTTCAACCACATACATGGAACATCAATCAAGAAACC 905 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 960 AGCTGTGGAGATCAAGAATGTAATGTACAATCACATACATGGAACATCAATCAAGAAACC 1019 Query 906 CTTTGTGCAACTCCTATGCAGCAAATCAGTCCCATGTAGAGATATATTCATGAACGATAT 965 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1020 CTTTGTGCAACTCCTATGCAGCAAATCAGTCCCATGTAGAGGTATATTCATGAACGATAT 1079 Query 966 TAACATTCACGACGAAAACGAAGAGGAAGAAAAGAAATATCATAAATCATTGTCTCGCCA 1025 ||||||| | ||||||||||||| |||||| ||||||| ||||||||||||||| || Sbjct 1080 AAACATTCGCAACGAAAACGAAGAAGAAGAAGAGAAATACCATAAATCATTGTCT---CA 1136 Query 1026 CGATGATCATCCTTCTGCTGAATGCATCAATGTTAAAGGTGAATCTAATGGTGTAATGAA 1085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TAATGATCATCCTTCTGCTGAATGCATCAATGTTAAAGGTGAATCTAATGGTGTAATGAA 1196 Query 1086 GCCAAAACTAGCTTGCTTGGAATCCAAAAGACATTGA 1122 ||||||||||| ||||||||||| ||||||||||||| Sbjct 1197 GCCAAAACTAGGTTGCTTGGAATTCAAAAGACATTGA 1233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5