BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39930.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493993 jgi|Araly1|493993|fgenesh2_kg.7__3426__AT5G39930.1 1932 0.0
> Ahg493993 jgi|Araly1|493993|fgenesh2_kg.7__3426__AT5G39930.1
Length=1431
Score = 1932 bits (1046), Expect = 0.0
Identities = 1285/1400 (92%), Gaps = 17/1400 (1%)
Strand=Plus/Plus
Query 2 AACTTTTCATCTTCCTCTCCAGAAATTGA-ACTCTTTAAATCCGAACTTAAGTCCCATCA 60
|||||||| ||||||||||||| | |||| |||||||||||| ||||| ||| ||||||
Sbjct 1 AACTTTTCGTCTTCCTCTCCAGCATTTGAGCCTCTTTAAATCCAAACTT-AGTTCCATCA 59
Query 61 AACTTTTTGTC-TTCTTGAGAAATCTGA-TAGAGACAAAACATGTTTGGTCCTCAAATAA 118
||||| || || |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 60 AACTTCTTATCTTTCTTGAGAAATCTGACAAGAAACAAAACATGTTTGGTCCTCAAATAA 119
Query 119 GACGAGT-GAAGTTGGAGAAACAGAGCGAACTCAGAATCGAATTGCAACCTACTTCACCT 177
|| |||| | | || ||||| |||||||||||||||||| || |||||| |||||| |||
Sbjct 120 GAAGAGTCG-ATTTAGAGAATCAGAGCGAACTCAGAATCAAAGTGCAACGTACTTCGCCT 178
Query 178 CTCAGACTCCGTTTGCTCGATGGCAAGGCTGAGATTTTCGGCTATGAACTTCCACATGAA 237
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 179 CTCAGACTCCGTTTGCTCGATGGAAAAGCTGAGATTTTCGGCTATGAACTTCCACATGAA 238
Query 238 GTTTGGATCACATTTCCACCTCTCATGACATTTGCGGTTTTTACATGGTATGGTGCAACT 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCTTGGATCACATTTCCACCTCTCATGACATTTGCGGTTTTTACATGGTATGGTGCAACT 298
Query 298 ATTGAAATAGATGGTATCA-CAGGAAATGAATATATATCATGTGAGACGCCTATGGTGAA 356
|||||||| ||||||| || | | |||||||||||||||||||||||| ||||||| |||
Sbjct 299 ATTGAAATCGATGGTACCATC-GAAAATGAATATATATCATGTGAGACACCTATGGCGAA 357
Query 357 CTATCTTGGACTGCACAACTCTCTACAAGTACAAAGACATCGTGTTACTTCCTCAACAAG 416
|||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 358 CTATCTTGAAGTGCACAACTCTCTACTAGTACAAAGACATCGTGTTACTTGCTCAACAAG 417
Query 417 AGATTCTGCATCTTCACAGGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGG 476
|||||||| ||||||||||| | ||||||| || ||||||||||||||| |||||||||
Sbjct 418 AGATTCTGTATCTTCACAGG-G--ACCAAGGATTGTCATTGTAGGGGATACAGACTCTGG 474
Query 477 GAAGAGCACATTGGCTAAAATGCTTCTGAATTGGGCTGTAAAAGATGGTTGGAAACCGAC 536
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 475 GAAGAGTACATTGGCTAAAATGCTTCTGAATTGGGCAGCAAAAGATGGTTGGAAACCAAC 534
Query 537 ATTTGTTGATCTTAATGTCGGTCAAAGCTCGATTACCATACCAGGAACTATCGCTGCTGC 596
|||||||||||||| | || ||||||||||| |||||||| |||||| | ||||| |
Sbjct 535 GTTTGTTGATCTTAACATTGGACAAAGCTCGATAACCATACCGGGAACTGTTTCTGCTAC 594
Query 597 TCCTATCAAAATGCTTGTGGATCCTGTTGAAGGGTTTCCTCTTGATAAGGCTCTTATTCA 656
||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 595 TCCTATCAAGATGCCTGTGGATCCTGTTGAAGGGTTTCCTCTTGATAAGGCTCTTGTGCA 654
Query 657 CTACTTTGGTCTCACAAATCCAAGTGTAAACCTTAGACTGTACAGAACCCTTGTGGAAGA 716
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 655 CTACTTTGGTCACGCAAATCCAAATGTAAACCTTAGACTGTACAGAACCCTTGTGGAAGA 714
Query 717 ACTTGCCAGAGAATTAAAAGAAGAGTTTTCCGCAAACGCTGAATCTAGAGCTTCTGGGAT 776
||||||||||||||||||||||||||||| | ||| |||||||| ||||||| |||||
Sbjct 715 GCTTGCCAGAGAATTAAAAGAAGAGTTTTCTGGTAACTCTGAATCTCGAGCTTCGGGGAT 774
Query 777 GGTGATTGACACTATGGGATTTATCGTTCGTGAAGGCTATGCGCTGCTTCTCCATGCAAT 836
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 775 GGTGTTTGACACGATGGGATTTATCGTTCGTGAAGGCTATACGCTGCTTCTCCATGCAAT 834
Query 837 AAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAGAGGAAAAACTCGTCTATGA 896
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 835 AAGGACGTTTAATGCATCTTTAGTTATTGTCCTTGGTCAAGAGGAAAAACTCGTCAATGA 894
Query 897 TCTGAAGAAAAATCTAAAATTCAAGAAGAATCTACAAGTCTTGAATCTTGAGAAGTCAGA 956
|||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 TCTGAAGAAAGATCTCAAATTCAAGAAGAATCTACAATTCTTGAATCTTGAGAAGTCAGC 954
Query 957 AGGAGTCTTCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGAA 1016
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 955 TGGAGTCTTCTCTAGGAGCTCGGACTTCCGCAAAACATTGAGGAACAGTAATATTCAGAA 1014
Query 1017 TTATTTCTATGGAGTCACCAACGATCTCA-CTGTCTACACAAAAACCGTTAAGTTCAGTG 1075
|||||||||||||||||| |||||||||| | |||||||| ||||| || ||||||| ||
Sbjct 1015 TTATTTCTATGGAGTCACGAACGATCTCAAC-GTCTACACCAAAACAGTAAAGTTCACTG 1073
Query 1076 ATGTGCAAGTATATCGAATCGGTGATTTTAGAGTGAGTGGTTCAACTTCTGCTCATCAAA 1135
||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1074 ATGTGCAAGTATATCAAATCGGTGATTTTCGAGAGAGTAGTTCAACTTCTGCTCATCAAA 1133
Query 1136 GAGGAAATGACCCTTTGAAGATCACACTTGTGACAATTGACGAACATCTTGTGAACAAAG 1195
||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1134 GAGGAAACAACCCTTTGAAGATCATACCTGTGACAATTGACGAACATCTTGTGAACAAAG 1193
Query 1196 TTCTTGCTATCTCATACGCCATAA-AACCTGATCAGATCATCTCAAGCATTGTTGCTGGA 1254
||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1194 TTCTTGCTATCTCATACACCA-AACAACCTCATCAGATCATCTCAAGCATTGTTGCTGGA 1252
Query 1255 TTTGTGTGTATCAAAAATGTTGATATTAGT-GAAGAGAGAATTACATATGTCTCTCCATC 1313
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 1253 TTTGTGTGTATCAAAAATGTTGATATT-GTTGAAGAGAGAATTACATATATCTCTCCATC 1311
Query 1314 AGCTGCGGAATTGCCTAGCAAAATATTGATCCTAGGGACTTTGACATGGCATGTAACTTG 1373
||||||||||||||||||||| | | ||||| | ||||||||||| ||||||||||||||
Sbjct 1312 AGCTGCGGAATTGCCTAGCAAGACACTGATCATGGGGACTTTGACTTGGCATGTAACTTG 1371
Query 1374 AGAAGCAAGAAACTAAAGAT 1393
||||||||||||||||||||
Sbjct 1372 AGAAGCAAGAAACTAAAGAT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5