BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39940.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947800 jgi|Araly1|947800|scaffold_704029.1 2298 0.0
> Ahg947800 jgi|Araly1|947800|scaffold_704029.1
Length=1489
Score = 2298 bits (1244), Expect = 0.0
Identities = 1408/1487 (95%), Gaps = 12/1487 (1%)
Strand=Plus/Plus
Query 82 AATTTTGAGTGTGTAATGAGCTTGAATTTGGCAAATCCTGTATGGGTTCCTGTAAAAGCT 141
||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 7 AATTTTGAGTGAGTAATGAACTTGAATTTGGCAAGTCCTTTATGGGTTCCTGTAAAAGCT 66
Query 142 TTGTTATGTAGAACAATCAGGAGAAGGAGAATTTTCACTGCCACTGCTATAACTAGTTTA 201
||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||| |||||
Sbjct 67 TTGTTATGTAGGACAATCACGAGAAGGAGAAATTTCACTTCCACTGCTATAACTCGTTTA 126
Query 202 GCCGACAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 261
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GCCGAAAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 186
Query 262 GGAGTTTATGGAGCAATTAGGGCTAAAACTCTCT-CACCTGATTTGAGAGTTTTGGTTAT 320
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 187 GGAGTTTATGGAGCTATTAGGGCTAAAACTCT-TGCACCTGATTTGAGAGTTTTAGTTAT 245
Query 321 TGAAAAAGGGAGTTTTCTTTCTAAGGTGAAGATTTCCGGTGGTGGTCGATGTAATGTGAC 380
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 246 TGAAAAAGGGAGATTTCTTTCTAAGGTGAAGATTTCTGGTGGTGGTCGATGCAATGTGAC 305
Query 381 AAATGGGCATTGCAATGATACTATTAATTTGGCTGGGCATTATCCTCGTGGTCATAAAGA 440
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 306 AAATGGGCATTGCAATGATACTATTAATTTGGCAGGGCATTATCCTCGTGGTCATAAAGA 365
Query 441 GCTTAAAGGTTCTTTCTTTTACACACATGGACCTGCTGATACTATGTCATGGTTTTCTGA 500
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 366 GCTTAAAGGTTCTTTCTTTTATACACATGGACCTGCTGATACTACGTCATGGTTTTCTGA 425
Query 501 GCATGGAGTGCCACTAAAGACTGAAGATGATGGAAGAGTATTCCCTGTTAGTGATAATTC 560
|||||||| ||||||||| |||||| |||||||||||||||||||| |||||| |||
Sbjct 426 TCATGGAGTACCACTAAAGGTTGAAGACGATGGAAGAGTATTCCCTGTCAGTGATTGTTC 485
Query 561 AT-TATCTGTAGTTGATTGTCTCTTAAATGAAGCAAACATTAGAGGAGTTAGGCTTGAGA 619
|| | |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 486 ATCT-TCTGTAATTGATTGTCTCTTAAATGAAGCAAACATTCGAGGAGTCAGGCTTGAGA 544
Query 620 GAGGAAAGTCTGTGTTAGCTGCTTCTATTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 545 GAGGAAAGTCTGTGTTAGCTGCTTCTACTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 604
Query 680 GGAAGCAAAGTGCTGACACGTCTGAATCTATAGAAGCTACATATCTTCTGATTGCAACTG 739
|||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 605 GGAAACAAAGTGCTGACGTGTCTGAATCTGTCGAAGCTACATATCTTCTGATTGCAACTG 664
Query 740 GAAGTAGCCAAAAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 799
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAAGTAGCCAACAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 724
Query 800 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACCGAGTTAGCAGGGATTA 859
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 725 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACTGCGTTAGCAGGGATTA 784
Query 860 GTTTCTCGAAAGTCCAAGCCAAACTGAAATTAGATAATCCATGCCC-GGATTTGTCTAAC 918
||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||
Sbjct 785 GTTTCTCGAAAGTCCAAGCCAAATTGAAATTAGATAATCCAT-CCCAGGATTTTTCTAAC 843
Query 919 CTCGTGCAGATTGGTCCTATGCTTGTAACACATTGGGGACTTAGTGGACCGGTTATTCTT 978
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 844 CTCGTGCAGATTGGTCCAATGCTTGTAACACATCGGGGACTTAGTGGACCGGTTATTCTT 903
Query 979 CGACTCTCTGCATGGGGTGCACGGTACCTCTTTAGTTCTAAGTACAAAGGGCATCTTATT 1038
|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 904 CGACTCTCTGCATGGGGTGCACGGCATCTCTTCAGTTCTAAGTACAAAGGGCATCTTATT 963
Query 1039 GTCGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1098
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GTTGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1023
Query 1099 CTGCAGTTTTCAAAGCACAAAGTGTCCAATTCCTATCCTCCTCAATTTGGTCTTGTCAAT 1158
||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 1024 CTGCAGTTTTCAAAGCACAAAGTATCCAACTCCTTTCCTCCTCAATTTGGTCTTGTCAAT 1083
Query 1159 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAGGACACCTTATGGGCTTCA 1218
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1084 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAAGACACCTTATGGGCTTCA 1143
Query 1219 TTGTCTAATAACTCCTTGAGCTCTATTTCTGATCTTCTTAAACATTGTACATTTCAAGTC 1278
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 CTGTCAAATAACTCATTGAGCTCTATTTCTGATCTTCTTACACATTGTACATTTCAAGTC 1203
Query 1279 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCCGAG 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1204 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCTGAG 1263
Query 1339 GTTTCTTTGAAGACAATGGAGAGCAAATTGGTTCCAAATCTTTTCTTTGCGGGAGAAGTA 1398
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 1264 GTTTCTTTGAAGACAATGGAGAGCAAATTAGTTCCGAACCTTTTCTTTGCGGGAGAGGTA 1323
Query 1399 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGTTAT 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1324 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGATAT 1383
Query 1459 ATCGCAGGCACAAACATCGGCGAATTAGCAAGTAGTAG---CAGAATAAGTTCGAAAGAA 1515
||||||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||||
Sbjct 1384 ATCGCAGGCACCAACATCGGCGAATCAGCAAGTAGTAGTAGCAGAAGAAGTTCTAAAGAA 1443
Query 1516 AGAAAAGTTACT-ATAGGATTGTAGTTTGCTT-ATAAGAAAAGTACT 1560
|||||||| | | ||||||||||||||| ||| |||||| |||||||
Sbjct 1444 AGAAAAGT-AGTTATAGGATTGTAGTTTTCTTTATAAGACAAGTACT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5