BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G39940.1 Length=1679 Score E Sequences producing significant alignments: (Bits) Value Ahg947800 jgi|Araly1|947800|scaffold_704029.1 2298 0.0 > Ahg947800 jgi|Araly1|947800|scaffold_704029.1 Length=1489 Score = 2298 bits (1244), Expect = 0.0 Identities = 1408/1487 (95%), Gaps = 12/1487 (1%) Strand=Plus/Plus Query 82 AATTTTGAGTGTGTAATGAGCTTGAATTTGGCAAATCCTGTATGGGTTCCTGTAAAAGCT 141 ||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 7 AATTTTGAGTGAGTAATGAACTTGAATTTGGCAAGTCCTTTATGGGTTCCTGTAAAAGCT 66 Query 142 TTGTTATGTAGAACAATCAGGAGAAGGAGAATTTTCACTGCCACTGCTATAACTAGTTTA 201 ||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||| ||||| Sbjct 67 TTGTTATGTAGGACAATCACGAGAAGGAGAAATTTCACTTCCACTGCTATAACTCGTTTA 126 Query 202 GCCGACAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 261 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCCGAAAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 186 Query 262 GGAGTTTATGGAGCAATTAGGGCTAAAACTCTCT-CACCTGATTTGAGAGTTTTGGTTAT 320 |||||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||| Sbjct 187 GGAGTTTATGGAGCTATTAGGGCTAAAACTCT-TGCACCTGATTTGAGAGTTTTAGTTAT 245 Query 321 TGAAAAAGGGAGTTTTCTTTCTAAGGTGAAGATTTCCGGTGGTGGTCGATGTAATGTGAC 380 |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 246 TGAAAAAGGGAGATTTCTTTCTAAGGTGAAGATTTCTGGTGGTGGTCGATGCAATGTGAC 305 Query 381 AAATGGGCATTGCAATGATACTATTAATTTGGCTGGGCATTATCCTCGTGGTCATAAAGA 440 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 306 AAATGGGCATTGCAATGATACTATTAATTTGGCAGGGCATTATCCTCGTGGTCATAAAGA 365 Query 441 GCTTAAAGGTTCTTTCTTTTACACACATGGACCTGCTGATACTATGTCATGGTTTTCTGA 500 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 366 GCTTAAAGGTTCTTTCTTTTATACACATGGACCTGCTGATACTACGTCATGGTTTTCTGA 425 Query 501 GCATGGAGTGCCACTAAAGACTGAAGATGATGGAAGAGTATTCCCTGTTAGTGATAATTC 560 |||||||| ||||||||| |||||| |||||||||||||||||||| |||||| ||| Sbjct 426 TCATGGAGTACCACTAAAGGTTGAAGACGATGGAAGAGTATTCCCTGTCAGTGATTGTTC 485 Query 561 AT-TATCTGTAGTTGATTGTCTCTTAAATGAAGCAAACATTAGAGGAGTTAGGCTTGAGA 619 || | |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 486 ATCT-TCTGTAATTGATTGTCTCTTAAATGAAGCAAACATTCGAGGAGTCAGGCTTGAGA 544 Query 620 GAGGAAAGTCTGTGTTAGCTGCTTCTATTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 679 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 545 GAGGAAAGTCTGTGTTAGCTGCTTCTACTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 604 Query 680 GGAAGCAAAGTGCTGACACGTCTGAATCTATAGAAGCTACATATCTTCTGATTGCAACTG 739 |||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||| Sbjct 605 GGAAACAAAGTGCTGACGTGTCTGAATCTGTCGAAGCTACATATCTTCTGATTGCAACTG 664 Query 740 GAAGTAGCCAAAAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 799 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 GAAGTAGCCAACAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 724 Query 800 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACCGAGTTAGCAGGGATTA 859 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 725 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACTGCGTTAGCAGGGATTA 784 Query 860 GTTTCTCGAAAGTCCAAGCCAAACTGAAATTAGATAATCCATGCCC-GGATTTGTCTAAC 918 ||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| Sbjct 785 GTTTCTCGAAAGTCCAAGCCAAATTGAAATTAGATAATCCAT-CCCAGGATTTTTCTAAC 843 Query 919 CTCGTGCAGATTGGTCCTATGCTTGTAACACATTGGGGACTTAGTGGACCGGTTATTCTT 978 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 844 CTCGTGCAGATTGGTCCAATGCTTGTAACACATCGGGGACTTAGTGGACCGGTTATTCTT 903 Query 979 CGACTCTCTGCATGGGGTGCACGGTACCTCTTTAGTTCTAAGTACAAAGGGCATCTTATT 1038 |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 904 CGACTCTCTGCATGGGGTGCACGGCATCTCTTCAGTTCTAAGTACAAAGGGCATCTTATT 963 Query 1039 GTCGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1098 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 GTTGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1023 Query 1099 CTGCAGTTTTCAAAGCACAAAGTGTCCAATTCCTATCCTCCTCAATTTGGTCTTGTCAAT 1158 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 1024 CTGCAGTTTTCAAAGCACAAAGTATCCAACTCCTTTCCTCCTCAATTTGGTCTTGTCAAT 1083 Query 1159 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAGGACACCTTATGGGCTTCA 1218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1084 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAAGACACCTTATGGGCTTCA 1143 Query 1219 TTGTCTAATAACTCCTTGAGCTCTATTTCTGATCTTCTTAAACATTGTACATTTCAAGTC 1278 |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1144 CTGTCAAATAACTCATTGAGCTCTATTTCTGATCTTCTTACACATTGTACATTTCAAGTC 1203 Query 1279 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCCGAG 1338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1204 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCTGAG 1263 Query 1339 GTTTCTTTGAAGACAATGGAGAGCAAATTGGTTCCAAATCTTTTCTTTGCGGGAGAAGTA 1398 ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| Sbjct 1264 GTTTCTTTGAAGACAATGGAGAGCAAATTAGTTCCGAACCTTTTCTTTGCGGGAGAGGTA 1323 Query 1399 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGTTAT 1458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1324 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGATAT 1383 Query 1459 ATCGCAGGCACAAACATCGGCGAATTAGCAAGTAGTAG---CAGAATAAGTTCGAAAGAA 1515 ||||||||||| ||||||||||||| |||||||||||| ||||| |||||| |||||| Sbjct 1384 ATCGCAGGCACCAACATCGGCGAATCAGCAAGTAGTAGTAGCAGAAGAAGTTCTAAAGAA 1443 Query 1516 AGAAAAGTTACT-ATAGGATTGTAGTTTGCTT-ATAAGAAAAGTACT 1560 |||||||| | | ||||||||||||||| ||| |||||| ||||||| Sbjct 1444 AGAAAAGT-AGTTATAGGATTGTAGTTTTCTTTATAAGACAAGTACT 1489 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62963174985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5