BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39950.1
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493991 jgi|Araly1|493991|fgenesh2_kg.7__3424__AT5G39950.1 771 0.0
> Ahg493991 jgi|Araly1|493991|fgenesh2_kg.7__3424__AT5G39950.1
Length=607
Score = 771 bits (417), Expect = 0.0
Identities = 577/647 (89%), Gaps = 40/647 (6%)
Strand=Plus/Plus
Query 4 GTCGTTCTTAAACGCAATCAGAGAGAGAAGCGAGACGAGAGACGATAATGGGAGGAGCTT 63
|||||||||||||| ||||||||||||||| ||||| |||| | ||||||||||| ||
Sbjct 1 GTCGTTCTTAAACGAAATCAGAGAGAGAAGAGAGAC--GAGA-G--AATGGGAGGAGTTT 55
Query 64 TATCAACTGTGTTTGGAAGTGGAGAAGATGCAACAGCTGCAGGGACCGAATCTGAGCCAA 123
|||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||
Sbjct 56 TATCAACTGTGTTTGGAAGTGGAGAAGA--C-GCAGCTCCAGGGACTGAATCTGAGCCAA 112
Query 124 GTCGCGTCCTAAAGTTTAGCTCTTCCGCTCGGTGGCAACTTCATTTCAACGAGATCAAAG 183
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 113 GTCGCGTCCTCAAGTTTAGCTCTTCTGCTCGATGGCAACTTCATTTCAACGAGATCAAAG 172
Query 184 AATCAAACAAACTGCTGGTGGTTGATTTCTCGGCCTCATGGTGCGGACCATGTAGGATGA 243
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 173 AATCTAACAAACTGCTGGTGGTTGATTTCTCGGCTTCATGGTGTGGACCATGTAGGATGA 232
Query 244 TTGAGCCTGCGATTCATGCCATGGCTGATAAGTTCAATGATGTTGATTTCGTCAAATTAG 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 233 TTGAGCCTGCGATTCATGCCATGGCTGATAAGTTCTCTGATGTTGATTTCGTCAAATTAG 292
Query 304 ATGTTGATGAACTTCCTGATGTGGCTAAAGAGTTTAATGTGACGGCAATGCCTACCTTTG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 293 ATGTTGATGAACTTCCTGATGTGGCTAAAGAGTTTAATGTGACGGCAATGCCAACTTTTG 352
Query 364 TGCTGGTGAAAAGGGGTAAAGAAATTGAAAGAATCATTGGTGCCAAAAAGGACGAACTTG 423
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 353 TGCTGGTGAAAAGGGGTAAAGAAATTGAAAGGATCATTGGAGCCAAAAAGGATGAACTTG 412
Query 424 AGAAGAAAGTTAGCAAACTCAGAGCATAATGAGCATTGTTAACGCCTTAACCAATAGTCT 483
|||||||||||||||||||||||||||| | | | ||| | | | |
Sbjct 413 AGAAGAAAGTTAGCAAACTCAGAGCATA--G----T-G--AAC-----A-----T--T-T 450
Query 484 TGTGTAAACTCAATAATAAATGGTATGTTTATGGGGAATGTGATGTTCTATACTCTCTGC 543
||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 451 TGTGTAAACTCGATAATAAATGGTATGTTG-TGGGGAATGTGATGTTCTAT--T-TCTA- 505
Query 544 TAATGTAAGACCTTCTGTGTGATGCCATGATTGATTGAAATGGTTTGTTGAAATGCTTAG 603
|| | |||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 506 TA-T--AAGACCTTTTGTGTGATGCCGTGATTGATTAAAATGGTTTGTTGAAATCCTTAG 562
Query 604 ACTCTGCTTTCAGTGGTTTATGATACAAAGTTGACACCTTTTCAGCT 650
|||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct 563 ACTCTGCTTT-AC-GGTTTATGATACAAAGTTGATGCCTTTTGAGCT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23826823125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5