BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39970.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493989 jgi|Araly1|493989|fgenesh2_kg.7__3422__AT5G39970.1 3186 0.0
> Ahg493989 jgi|Araly1|493989|fgenesh2_kg.7__3422__AT5G39970.1
Length=2090
Score = 3186 bits (1725), Expect = 0.0
Identities = 1967/2084 (94%), Gaps = 16/2084 (1%)
Strand=Plus/Plus
Query 131 ATGGGTTCTCTCTGTTCTATAGCCATGTTTCTTTCTTTTCTTCTGTTGTTTCTTGCCAAA 190
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTTCTCTCTGTTTTATAGAAATGTTTCTTTCTTTCCTTCTGTTGTTTCTTGCCAAA 60
Query 191 AAATCCTTGTCACATCCTTTATGTAATGATTTGACTGCACCGTTTAATCTGAAGCAACCG 250
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AACTCCTTTTCACATCCTTTATGTAATGATTTGACTGCACCGTTTCATCTGAAGCAACCG 120
Query 251 CTAGGTTTTTGTCAATTCAATGGAAGTGTATGCTGTAACTCCCTG-GAAGACTTGAAGTT 309
|| | |||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 121 CTCGCTTTTTGTCAATTCAATGGAAGTGTATGCTGTAACTCCC-GAGACGACTTGAAGTT 179
Query 310 GCAGAGACAGTTTAAAGC-ATTCAATGTATCTGGCAGATGTTCTCCACTTCTCAAATCAT 368
||||||| |||||||||| || || |||||||||||||||||||| ||||| |||||||
Sbjct 180 GCAGAGAGAGTTTAAAGCGGTT-AACGTATCTGGCAGATGTTCTCCGCTTCTTAAATCAT 238
Query 369 TACTTTGCTCGAAGTGTGATCCTTTCGCAGCAGAGCTTTTCCGCGTTGAGTCAGAATCTA 428
|||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 239 TACTTTGCTCAAAGTGTGATCCTTTCGCAGCAGAACTTTTCCGTGTTGAATCAGAATCTA 298
Query 429 GACAAGTTCCTGTGCTCTGCAACTCCACAGTTTCTTCTAGTAAATCAACACAATCGCTAG 488
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 299 GACAAGTTCCTGTGCTCTGCAACTCTACAGTTTCTTCTAGTAAATCAACACAATCGCTGG 358
Query 489 CCGACATTGATTTCTGTGCCACATTTTGGAATGAATGCCAGAGTCTCTCTGTAACCAACA 548
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 CAGACATTGATTTTTGTGCCACATTTTGGAATGAATGCCAGAATCTCTCTGTAACCAACA 418
Query 549 CTCCGTTTGCATCTCAAGCTGGAGATGGAGGCAACATCACTTCCACAATATCTGAAATAT 608
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTCCTTTTGCTTCTCAAGCTGGAGATGGAGGCAACATCACTTCCACAATATCTGAAATAT 478
Query 609 GGAAATCAAGTAATGACTTCTGCAAGATTTTTGGTGGAGCTTCAGATGAATCCTCTGTGT 668
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 GGAAATCAAGCAATGACTTCTGCAAAATTTTTGGTGGAGCTTCAGATGAATCCTCTGTGT 538
Query 669 GCTTCAATGGTCAGGAAGTTTCATTTAACGTTTCAAAAGTTACTGGTCCATCATCTCCTT 728
|||| || || || | ||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 539 GCTTTAACGGCCAAGCAGTTTCATTTAACATTTCAAAAGTTACTGGT-C--CATCTCCTT 595
Query 729 CAGGCATATGCATCGAGAAGATTGGAAATGGGTCTTATCTTAACATGGTACCTCATCCTG 788
||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 596 CAGGCATATGCCTCGAGAAGCTTGGAAATGGGTCTTATCTTAACATGGAACCTCATCCTG 655
Query 789 ATGGTTCTAATCGTGTCTTTCTGTCTGATCAACCCGGGAAGATATACTTGGTGACAGTTC 848
|||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 656 ATGGTTCTGATCGCGTCTTTCTGTCTGATCAACCCGGGAAGATATACTTGGCGATAGTTC 715
Query 849 CAGCTCAAGGATCAGGAGAACTTTTGAAAATAGATGAAACTAACCCGTTTCTTGATCTTA 908
||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 716 CAGCTCAAGGATCTGGAGAAATTTTGAAAATAGACGAAACTAACCTGTTTCTTGATCTTA 775
Query 909 CTGAAGAAGTGCACTTTGATGCTGAGCTTGGTCTCCTAGGAATAGCTTTCCATCCTGACT 968
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 776 CTGAAGAAGTGCACTTTGATGCTGAGCTTGGTCTCTTAGGAATAGCTTTCCATCCCGAAT 835
Query 969 TCTTGAAAAACGGAAGATTCTTTGCTTCTTTCAACTGCGATAGAGTTAAGTGGCCCGAAT 1028
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 TTTTGAAAAACGGTAGATTCTTTGCTTCTTTCAACTGCGATAGAGTTAAGTGGCCAGAAT 895
Query 1029 GTTCTGGAAAATGCGCGTGCAACTCAGATATTGACTGTGACCCTGCAAAGCTAGATTCTG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GTTCTGGAAAATGCGCGTGCAACTCAGATATTGACTGTGACCCTGCAAAGCTAGATTCTG 955
Query 1089 ATAATGGAGCAACTCCATGTCAATACCATAGTGTCATATCAGAATTCTTTACCAATGGGA 1148
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 ATAATGGAGCAACCCCATGTCAATACCACAGTGTCATATCAGAATTCTTTACCAATGGGA 1015
Query 1149 CGTATGTTAGACCGGTGGAGGTAAGAAGAATCTTTACAATGGGTCTTCCTTTTTCATCGC 1208
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 CTTATGTTAGACCGGTGGAGGTAAGAAGAATCTTTACAATGGGTCTTCCTTTTACATCGC 1075
Query 1209 ATCACGGTGGACAGATCTTGTTCGGACCTAAAGATGGGTACTTGTATTTCATGATGGGAG 1268
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 ATCATGGTGGACAGATCTTGTTCGGACCAAAAGATGGGTACTTGTATTTCATGATGGGAG 1135
Query 1269 ATGGAGGAAGTAAAGGAGACCCATACAACTTTGCACAGAACAAGAAATCATTGCTTGGGA 1328
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1136 ATGGAGGAAGTAAAGGAGATCCACACAACTTTGCACAGAACAAGAAATCATTGCTCGGGA 1195
Query 1329 AGATCATGAGACTTGATGTTAATAATGTTCTTGATGCAAAAGCGATGAATGAGTTTCAGC 1388
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 AGATCATGAGACTTGATGTTAATAATGTTCTTGATGCAAAAATGATGAATGAGTTTCAGC 1255
Query 1389 TATGGGGAAACTATTCTATACCAAAGGACAATCCGTTTTCTCAAGATAAGAATCTGCTGC 1448
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1256 TATGGGGGAACTATTCTATACCAAAGGACAATCCGTTTTCGCAAGATAAGAATCTGTTGC 1315
Query 1449 CTGAAATATGGGCCATGGGAGTAAGAAATCCATGGCGATGCAGTTTTGATTCAGAGAGGC 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTGAAATATGGGCCATGGGAGTAAGAAATCCATGGCGATGCAGTTTTGATTCAGAGAGGC 1375
Query 1509 CGTCTTATTTCCTTTGCGCAGATGTTGGAGAGGACCAATATGAAGAAGTTGATATGATTA 1568
||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1376 CGTCTTATTTCTTTTGCGCAGATGTTGGCGAGGACAAATATGAAGAAGTTGATATGATCA 1435
Query 1569 CTAAGGGAGGAAACTATGGTTGGCATTACTACGAGGGAACTTTGCCATTTCATCCCTCGA 1628
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1436 CTAAGGGAGGAAACTATGGTTGGCATTACTACGAGGGAACTTTGCCATTTAATCCCTCGA 1495
Query 1629 GTTCTTCTAATATCAGCAACTCAACAACAAAGATTGAAAATCCGATCTTCCCGGTAATGT 1688
||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1496 CTTCTTCTAAAAACAGCAACTCAACAACAAAGATTGCAAATCCGATCTTCCCGGTAATGT 1555
Query 1689 GGTACAACCATTCAGACATAAACCAACAAGAAGGATCATCAGCATCAATAACTGGCGGAT 1748
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1556 GGTACAATCATTCAGACATAAACCAACAAGAAGGATCA---GCATCAATAACTGGCGGAT 1612
Query 1749 ACTTTTACCGTTCCTCCACTGATCCATGCCTT-TATGGAACGTATCTCTTTGCAGACTTG 1807
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1613 ACTTTTACCGTTCCTCCACTGATCCATGC-TTGTATGGAACGTATCTCTTTGCAGACTTA 1671
Query 1808 TACGCTGGAATGATTTTTGGTGGAGCTGAAACTCCAGTTGGTAGTGGAAACTTCACGAGC 1867
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1672 TACGCTGGAATTATTTGGGGTGGAGCTGAAATTCCAGTTGGTAGTGGAAACTTCACGAGC 1731
Query 1868 TCTCATATTCCGTTACAATGCGCTTCGGATTCGCCAATCCCTTGCTCATCTGAAACAGAA 1927
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TCTCAAATCCCGTTACAATGCGCTTCGGATTCGCCAATCCCTTGCTCATCTGAAACAGAA 1791
Query 1928 CCTTCCTCTTCTTCGTCTCCACCAATTGGCTTTGTATTCTCCTTTGGAGAAGACGACAAT 1987
||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1792 CCTTCCTCTTCCTCATCTCCACCAATTGGCTTTGTATTCTCCTTTGGAGAAGACAACAAT 1851
Query 1988 AAAGACATATACTTACTTGCAAGCACTGGTGTTTACAGAATCGTTGGCC-CGAGCCGCTG 2046
|||||| | ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1852 AAAGACGTCTACTTACTTACAAGCACTGGTGTTTACAGAATCGTTC-CCTCGAGCCGCTG 1910
Query 2047 TAACTTCCATTGCTCTCTTGAAAACACAACGTCCTCACCTCCTTCAAAACAGCCTGATCG 2106
||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||
Sbjct 1911 TAACTTCCATTGCTCTCTTGAGAACACAACGTTCTTACCTCCTTCACAACAGCCTGATCG 1970
Query 2107 TTCTCCACCGTCTTCGTCATTTTCTAAAAAACTACACAACATTGGTACTCTTGTTGTAAA 2166
|| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1971 TTTTCCGCCGTCTTCATCATTGTCTAAACGACTACACAACATTGGTACTCTTGTTGTAAA 2030
Query 2167 T-TACTTAGCTTGGTGTGTTCTTTTGGTAGTTATATAGAGAAAA 2209
| | ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 2031 TGT-CTTAGCTTGGTGTTTTCTTTTTGTAGTTATATAGAGAAAA 2073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5