BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39980.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947790 jgi|Araly1|947790|scaffold_704019.1 3373 0.0
> Ahg947790 jgi|Araly1|947790|scaffold_704019.1
Length=2083
Score = 3373 bits (1826), Expect = 0.0
Identities = 1986/2064 (96%), Gaps = 8/2064 (0%)
Strand=Plus/Plus
Query 1 ATGTACATAGAAATTGCTTCATCTTCTTCACTTTCTCTTCCATTATTACCCTTAACCAGA 60
||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 21 ATGTATATAGACATTGCTTCATCTTCTTCTCTTTCTCTTCCATTTTTACCCTTAACCAGA 80
Query 61 CCTCATATCTACACTTCG-ATACCCTTCTCCACCATTCCTGAAGCTAGACAACGCAATCT 119
|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCTCATATTTACACTT-GCATACCCTTCTCCACCATTCCTGAAGCTAGACAACGCAATCT 139
Query 120 CATCTTCACAGTCTCTGCTTCTTCTTCTTCAG----A--ATCCACACAAAACAAAAAGGT 173
||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||
Sbjct 140 CATCTTCACAGTCTCTGCTTCTTCTTCATCAGCATCATCATCCACACAAACCAAAAAGGT 199
Query 174 ATGGAGAAAACAACCGGAGAAGAACACTACGTCGTCGTTTCAGGCCTTAAGGAAACATCG 233
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 200 ATGGAGAAAACAACCGGAGAAGAACACAACGTCGTCGTTTCAGGCGTTAAGGAAACATCG 259
Query 234 GAGGTATCAAAGATCTGCTTTTCTCGACCACAACGTCGATATGGACGAGCTTTTAGCTTC 293
||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||
Sbjct 260 GAGGTATCAAAGATCTGCTTTTCTCGATCATAACGTCGACATGGACGAGCTTCTAGCTTC 319
Query 294 AATTCACCAGACCCAGAACGAAAAAGAGCTTTTTTCTTTGCTTTCAACTTACAAAGACAG 353
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 320 AATTCATCAGACCCAGAACGAAAAAGAGCTTTTTTCTCTGCTTTCAACTTACAAAGACAG 379
Query 354 ACAATTATCTATACGGTTCATGGTCTCTCTTCTTTCTCGAGAAAATGATTGGCAGAGATC 413
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 380 ACAATTGTCTATACGGTTCATGGTTTCTCTTCTTTCTCGAGAAAATGATTGGCAGAGATC 439
Query 414 ATTGGCATTGCTCGATTGGGTTCATGAGGAAGCCAAATACACACCTTCTGTGTTCGCCTA 473
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 440 ATTAGCATTGCTCGATTGGGTTCATGAAGAAGCTAAATACACACCTTCTGTGTTCGCCTA 499
Query 474 CAATGTTGTTCTTCGAAATGTGTTGAGAGCTAAGCAGTTTGATATTGCACACGGACTGTT 533
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 500 CAATGTAGTTCTTCGAAATGTGTTGAGAGCTAAGCAATTTGGTATTGCACACGGACTGTT 559
Query 534 CGACGAAATGCGTCAGAGAGCTCTTGCCCCTGATAGGTATACTTATTCAACGCTAATTAC 593
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 560 CGACGAAATGCGTCAGAGAGCTCTTGCGCCTGATAGGTATACTTATTCGACGCTAATTAC 619
Query 594 CTCGTTTGGTAAAGAGGGTATGTTTGATTCTGCTTTGTCTTGGCTTCAAAAGATGGAACA 653
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 620 TTCGTTTGGGAAAGAGGGTATGTTTGATTCGGCTTTGTCTTGTCTTCAAAAGATGGAGCA 679
Query 654 AGACCGTGTTTCTGGTGACCTTGTTTTGTATAGCAACCTCATTGAGCTTTCTAGGAGGCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AGACCGTGTTTCTGGTGACCTTGTTTTGTATAGCAACCTCATTGAGCTTTCTAGGAGGCT 739
Query 714 GTGTGATTACTCTAAGGCTATCTCGATTTTCTCGAGGTTGAAGAGGTCTGGTATTACGCC 773
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 740 GTGTGATTACTCAAAGGCTATTTCGATTTTCTCGAGGTTGAAGAGGTCTGGTATTACGCC 799
Query 774 TGATCTTGTTGCGTATAATTCGATGATCAATGTTTATGGAAAGGCCAAATTGTTTAGAGA 833
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct 800 TGATCTTGTTGCGTATAATTCGATGATTAATGTTTATGGGAAGGCCAAATTGTTCAAAGA 859
Query 834 GGCGCGGTTGCTTATAAAGGAGATGAATGAAGCTGGTGTCTTACCAAATACAGTTAGTTA 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GGCGCGATTGCTTATAAAGGAGATGAATGAAGCTGGTGTCTTACCAAATACAGTTAGTTA 919
Query 894 CTCTACTCTTTTGAGTGTTTATGTAGAGAATCACAAGTTTTTAGAAGCTTTATCGGTTTT 953
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 920 CTCCACTCTTTTGAGTGTGTATGTAGAGAATCAGAAGTTTTTAGAAGCTTTATCGGTTTT 979
Query 954 CGCAGAGATGAAAGAGGTGAATTGTGCGTTGGATCTCACGACTTGTAATATAATGATTGA 1013
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 980 CGCGGAGATGAAAGAGGTGAATTGTCCGTTGGATCTCACGACTTGTAATATAATGATCGA 1039
Query 1014 TGTTTATGGTCAGCTTGACATGGTTAAAGAAGCTGATAGGTTGTTTTGGAGTTTGAGGAA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TGTTTATGGTCAGCTTGACATGGTTAAAGAAGCTGATAGGTTGTTTTGGAGTTTGAGGAA 1099
Query 1074 AATGGATATTGAACCTAATGTTGTTAGCTACAATACTATCCTTCGTGTTTACGGTGAGGC 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1100 AATGGATATTGAACCTAATGTTGTTAGCTACAATACTATCCTTCGTGTTTACGGCGAGGC 1159
Query 1134 TGAGCTTTTCGGTGAAGCGATTCATCTTTTCAGGTTGATGCAGAGGAAAGACATTGAACA 1193
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGAGCTTTTCGGTGAAGCAATTCATCTTTTCAGGTTGATGCAGAGGAAAGACATTGAACA 1219
Query 1194 GAACGTTGTTACTTACAATACGATGATTAAGATCTATGGGAAAACTATGGAGCACGAAAA 1253
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GAACGTTGTTACGTACAACACGATGATTAAGATCTATGGGAAAACTATGGAGCACGAAAA 1279
Query 1254 GGCCACGAATCTTGTTCAAGAGATGCAGAGCCGAGGAATTGAACCTAATGCCATTACCTA 1313
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1280 GGCCACGAATCTTGTTCAAGAGATGCAGAGCCGAGGAATTGAACCTAACGCCATTACCTA 1339
Query 1314 CTCAACTATTATATCAATATGGGGAAAAGCTGGGAAATTGGACCGAGCTGCGACACTGTT 1373
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1340 CTCAACTATTATATCAATATGGGGGAAAGCTGGGAAATTGGACCGAGCTGCGACACTGTT 1399
Query 1374 TCAGAAGCTGAGGAGCTCTGGTGTGGAAATCGATCAAGTTCTGTATCAAACCATGATTGT 1433
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1400 TCAGAAGCTTAGGAGCTCGGGTGTGGAAATCGATCAAGTCCTGTATCAAACCATGATTGT 1459
Query 1434 GGCTTATGAAAGAGTTGGTCTAATGGGTCATGCTAAACGTCTGCTTCACGAGTTAAAGCT 1493
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1460 GGCATATGAAAGAGTTGGTCTAATGGGTCATGCTAAACGTCTGCTTCATGAGTTAAAGCT 1519
Query 1494 CCCGGATAATATTCCTCGGGAAACCGCTATCACCATTCTGGCTAAAGCTGGGAGAACGGA 1553
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1520 CCCGGATAATATCCCTCGGGAAACCGCTATCACCATTCTGGCTAAAGCCGGGAGAACTGA 1579
Query 1554 AGAGGCGACATGGGTTTTTCGTCAAGCCTTTGAATCCGGGGAGGTAAAAGACATATCAGT 1613
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1580 AGAGGCGACATGGGTTTTTCGTCAAGCTTTTGAATCCGGAGAGGTAAAAGACATATCAGT 1639
Query 1614 ATTTGGCTGTATGATCAATCTTTACTCAAGAAACCAAAGATACGTAAATGTCATCGAAGT 1673
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1640 ATTTGGCTGTATGATCAATCTTTACTCAAGAAACCAAAGGTACGTAAATGTCATCGAAGT 1699
Query 1674 GTTTGAGAAAATGAGAACCGCTGGTTACTTTCCGGATTCGAATGTGATAGCTATGGTGTT 1733
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1700 GTTTGAGAAAATGAGAACCGCTGGTTACTTTCCGGATTCGAATGCGATAGCTATGGTGTT 1759
Query 1734 GAACGCGTACGGGAAACAAAGAGAGTTTGAAAAAGCAGACACGGTTTACAGAGAAATGCA 1793
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1760 GAACGCGTATGGGAAACAAAGAGAGTTTGAAAAAGCAGATACGGTTTACAGAGAAATGCA 1819
Query 1794 AGAGGAAGGATGTGTTTTCCCTGATGAAGTTCATTTCCAAATGCTGAGTTTATACTCATC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 AGAGGAAGGATGTGTTTTCCCTGATGAAGTTCATTTCCAAATGCTGAGTTTATACTCATC 1879
Query 1854 GAAGAAAGATTTTGAGATGGTTGAGTCGTTGTTTCAGAGATTAGAATCTGATCCTAATGT 1913
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1880 GAAGAAAGATTTTGAGATGGTTGAATCGTTGTTTGAGAGATTGGAATCTGATCCTAATGT 1939
Query 1914 CAATAGCAAGGAGTTGCATTTGGTTGTGGCGGCTTTGTATGAGAGAGCAGATAAACTAAA 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 CAATAGCAAGGAGTTGCATTTGGTTGTGGCGGCTTTGTATGAGAGAGCAGATAAACTAAA 1999
Query 1974 CGATGCTTCAAGAGTCATGAATCGGATGAGAGAACGAGGAATCTTAAAGCCATTTCCTGG 2033
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 2000 CGATGCTTCAAGAGTCATGAATCGAATGAGAGAACGAGGAATCTTAAAGCCGTTTTCTGG 2059
Query 2034 TTGAATAATGTCATATAATTCTTC 2057
|||||||||||||||||||||||
Sbjct 2060 ATGAATAATGTCATATAATTCTTC 2083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5