BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G39990.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493988 jgi|Araly1|493988|fgenesh2_kg.7__3421__AT5G39990.1 2573 0.0
> Ahg493988 jgi|Araly1|493988|fgenesh2_kg.7__3421__AT5G39990.1
Length=1642
Score = 2573 bits (1393), Expect = 0.0
Identities = 1578/1663 (95%), Gaps = 30/1663 (2%)
Strand=Plus/Plus
Query 22 tccttcttcaatctctctattctcttactaacgttatttcttcAATCTCATTGATCaaaa 81
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||
Sbjct 2 TCCTTCTTCAATCTCT-T-CTCTTTTACTAACGTTATTTCTTCAATCTCATTGATC--AA 57
Query 82 aaaaccaaaaccctaatctgcaaaaatctc-aatttcctccaaaagtttcagtttttaaa 140
|||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 58 GAAACAAAAACCCTAATC-GCAAAAATCTCAAATTTCTTCCAAAAGTTTCAGTTTTTAAA 116
Query 141 aatGGGTTTTCTTCTTTTGTAACGAAAAAATGTGTCAAACTTTGAATTGACCAttttttt 200
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 117 AATGTGTTTTCTTCTTTTGTAACGTAAAAATGTGTCAAACTTTGAATTGACCA--TTTTT 174
Query 201 ttATAAGGATTCGATGAAGAAATTGAGAAGCTATTACTCAAATGTGAGAcatcatcagaa 260
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TT-TGA-GATTCGATGAAGAAATTGAGAAGCTATTACTCAAATGTGAGACATCATCAGAA 232
Query 261 tcaccatcatcatcaccatcatcatAGCAACATTGTTTCTTCAGAGAGGAAATGGA-TAT 319
| ||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 233 T---CATCATCATCATCATCATCATAACAATGTTGTTTCTTCAGAGAGGAAATGGATTA- 288
Query 320 TTTTCCCTCTATTGATTGGTTCAATCTTCGCTTTGTTCTTACTCTTCCTCACAACAACCC 379
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TATTCCCTCTTTTGATTGGTTCAATCTTCGCTTTGTTCTTACTCTTCCTCACAACAACCC 348
Query 380 TAACTTCACCAACCGGAGGAGTCCGATTTCTCCCTTTTACCCGACCCGTTTTGTTAACCG 439
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAACTTCACCAACC---GGAGTCCGATTTCTCCCTTTTACCCGACCCGTTTTGTTAACCG 405
Query 440 GATCTGGTTCATCAGCTTTCGTTGAATCCAAAATCAAACCTCAACAAATCTCATCACTCC 499
|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 406 GATCTGGTTCTTCAGCTTTCGTTGAATCCAAGATCAAACCTCAACCAATCTCATCACTCC 465
Query 500 CGTCGCCACCGCGTTTTGCTTACTTGATTTCTGGATCCGCCGGCGACGGGAAATCTCTCC 559
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 466 CATCGCCACCGCGTTTTGCTTACTTGATTTCTGGATCCGCCGGTGACGGGAAATCTCTCC 525
Query 560 GGCGAACTCTTTTGGCTCTTTACCATCCGAATAATCGGTATGTTGTTCATTTAGATAGAG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GGCGAACTCTTTTGGCTCTTTACCATCCGAATAATCGGTATGTTGTTCATTTAGATAGAG 585
Query 620 AATCTT-CGCGTGAGGAGAGAGAGGAGCTTCATGGATATATCAAAAACTCGTCTTTGTTT 678
|||||| | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AATCTTCCAAG-GAAGAGAGAGAGGAGCTTCATGGATATATCAAAAACTCGTCTTTGTTT 644
Query 679 CGAAGGTTTATGAATGTTCATATGATTGAGAAAGCTAATCTTGTCACGTATCGTGGACCT 738
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 645 CGAAGGTTTATGAATGTTCATATGATTGAGAAAGCTAATCTTGTTACGTATCGTGGACCT 704
Query 739 ACTATGGTTGCCAATACACTTCACGCCGCTGCGATTTTGCTTAGAGAAGGAGCTGATTGG 798
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 705 ACCATGGTTGCGAATACACTTCACGCCGCGGCGATTTTGCTTAGAGAAGGAGCTGATTGG 764
Query 799 GATTGGTTTATCAATCTTAGCTCTTCTGACTATCCTTTAGTGACTCAAGATGATTTGTTG 858
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 765 GATTGGTTTATTAATCTTAGCTCTTCTGATTATCCTCTAGTGACTCAAGATGATTTGTTG 824
Query 859 CATATCTTTTCGCATTTGCCGCGGGATTTGAACTTCATTGATCATACTAGTAACATTGGA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CATATCTTTTCGCATTTGCCGCGGGATTTGAACTTCATTGATCATACTAGTAACATTGGA 884
Query 919 TGGAAAGCATCACAAAGAGCAAAACCGGTGATTATAGATCCTGGACTGTATTTGAACAAG 978
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 885 TGGAAAGCATCACAAAGAGCAAAACCGGTAATTATAGATCCTGGACTGTATTTGAACAAG 944
Query 979 AAATCTGATGTTTTTTGGGTTACGCAAAGACGGAGCATCCCAACAGCATTCAAGCTTTTC 1038
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 AAATCTGATGTTTTTTGGGTTACGCAAAGACGAAGCATCCCAACAGCATTCAAGCTTTTC 1004
Query 1039 ACAGGCTCTGCTTGGATGGCGTTATCTCGGCCATTCGTCGACTATTGTATATGGGGTTGG 1098
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 1005 ACAGGCTCTGCTTGGATGGCGTTATCTCGGCCATTCATCGACTACTGTATTTGGGGTTGG 1064
Query 1099 GATAATCTACCTCGTACGGTCTTAATGTATTACTCGAATTTTCTCTCTTCTCCAGAAGGA 1158
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1065 GATAATCTACCTCGTACCGTCTTAATGTATTACTCGAATTTTCTCTCTTCCCCAGAAGGA 1124
Query 1159 TATTTTCACACTGTTCTCTGCAACGCTGAGGAATTCAGAAACACAACGGTAAATAGCGAC 1218
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1125 TATTTTCACACTGTTCTCTGCAACGCTGAGGAATTCAGAAACACAACAGTAAATAGCGAC 1184
Query 1219 CTGCACTTCATATCGTGGGACAATCCGCCTAAGCAGCATCCACACCATCTCACTCTTACA 1278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1185 CTGCACTTCATATCATGGGACAATCCGCCTAAGCAGCATCCACACCATCTCACTCTTGCA 1244
Query 1279 GACATGACCAAAATGGTAAATAGCAATGCCCCGTTTGCTAGAAAGTTCAGAAGAGAAGAT 1338
|||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||
Sbjct 1245 GACATGACTAAAATGGTAGACAGCAATGCCCCGTTTGCAAGAAAATTCAGAAGAGAAGAT 1304
Query 1339 CCTGTCCTTGACAAGATCGATGATGAGCTCCTTAACAGAGGTCCTGGGATGA-TAACACC 1397
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1305 CCTGTCCTTGACAAGATCGATGATGAGCTCCTTAACAGAGGTCCTGGGATGGCTA-CACC 1363
Query 1398 TGGCGGTTGGTGCATTGGAAGCCATGAGAATGGGAGTGACCCTTGTGCTGTTATTGGTGA 1457
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 1364 TGGCGGTTGGTGCATTGGAAGCTATGAGAATGAGAGTGATCCTTGTGCTGTTATTGGTGA 1423
Query 1458 TACTGATGTTATCAGGCCTGGTCCAGGCGCTAGACGGCTCGAGAATCTGGTAACTTCGTT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 TACTGATGTTATCAGGCCTGGTCCAGGCGCTAGACGGCTCGAGAATCTGGTAACTTCGTT 1483
Query 1518 ATTATCCACTGAGAATTTCCGATCAAAACAGTGTAAGTGATCTGATATATCTAGAGAACG 1577
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1484 ATTATCAACTGAGAATTTCCGATCAAAACAGTGCAAGTGATCTGA-ATATCTAGAGAACG 1542
Query 1578 ACATCACATAGAGATGGAATGTAGCAGCCTTGATTATTGGGGTTAGATGTGATTTAGGAT 1637
|||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1543 ACATCA-A-AGAGATTGAATGTAGCAGCCTTGATTATTGGGATTAGATGTGATTTAGGAT 1600
Query 1638 CTGATAGAAATCCCTCTTTTA----GTCAAGAATATAAGTGAA 1676
|| |||| | ||||||||||| ||||||| ||||||||||
Sbjct 1601 CTTATAGCA-TCCCTCTTTTACTTAGTCAAGATTATAAGTGAA 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5