BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G39995.1

Length=1059
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355996 jgi|Araly1|355996|fgenesh1_pg.C_scaffold_7003169           346    2e-94


> Ahg355996 jgi|Araly1|355996|fgenesh1_pg.C_scaffold_7003169
Length=819

 Score =  346 bits (187),  Expect = 2e-94
 Identities = 234/256 (91%), Gaps = 5/256 (2%)
 Strand=Plus/Plus

Query  398  AGGTAAGTCTTGTAGATCAAGGTGGTATAACCATTTGGATCCAAGGATTAGGAATGATGT  457
            ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  174  AGGTAAGACTTGTAGATCAAGGTGGTTTAACCATTTGGATCCAAGGATTAGGAATGATGC  233

Query  458  TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTACAACGAATGGGGTTGCAAATG  517
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  234  TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTATAACGAATGGGGTTGCCAATG  293

Query  518  GTCTAAGATTGCTAGGCTTTTCCCTGGAAGAACAGACAGACAAATGCAGAGACTATGGCG  577
            ||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct  294  GTCTAGGATTGCTAGGCTTTTTCGTGGAAGAACAGACAGACAAATGCAGAAACTATGGCG  353

Query  578  -ATTGGTCATGAAAACAAAATTGGAGAGGCCATAAACTTCTACTCATGAACTAACTGCAA  636
             |  ||||||||||| ||  ||| ||| | ||| |||||||| ||||||||||| |||||
Sbjct  354  CAA-GGTCATGAAAA-AA--TTGAAGAAGACATCAACTTCTATTCATGAACTAAATGCAA  409

Query  637  ATGACAAAATAGAAGG  652
            ||||||||| ||||||
Sbjct  410  ATGACAAAAGAGAAGG  425


 Score =  224 bits (121),  Expect = 1e-57
 Identities = 173/197 (88%), Gaps = 8/197 (4%)
 Strand=Plus/Plus

Query  729  AGGGTTTGTACGTGATAAAAGTACAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC  788
            ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  423  AGGGTTTTTACGTGATGAAAGTAGAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC  482

Query  789  TAA---GTATCGCAACGAAACAATG-AATTACTTAGCTCATCAACGTCGCTTCTATAACA  844
            |||   ||||| ||| ||||| | | ||| ||||||||||||| |||| ||| |||||||
Sbjct  483  TAATAAGTATCTCAAAGAAACCAGGCAAT-ACTTAGCTCATCAGCGTCACTTTTATAACA  541

Query  845  TCCCTAAAGGTTTCTTGGCAATGTCCACACCGCCTGTCTCCAACTCTCAACcatcatcat  904
            |||||| ||||| |||| ||||||||||||| | |||||||| |||||||||||||||||
Sbjct  542  TCCCTACAGGTTACTTGCCAATGTCCACACCACATGTCTCCATCTCTCAACCATCATCAT  601

Query  905  catcatcatcaccatca  921
            ||||||  | |||||||
Sbjct  602  CATCAT--T-ACCATCA  615


 Score =  195 bits (105),  Expect = 8e-49
 Identities = 142/159 (89%), Gaps = 6/159 (4%)
 Strand=Plus/Plus

Query  174  AGACACCGTCAAATGAGGTTCAAGAAGAAATCAATTCATTGAGGTG-GAA-ACGTTGGAC  231
            ||| ||| |||||||||||||||||||||||||||||| | |  || | | |||||||||
Sbjct  26   AGAGACCATCAAATGAGGTTCAAGAAGAAATCAATTCACT-AT-TGAGCAGACGTTGGAC  83

Query  232  ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTATGGTCCTCA-AAAATGGC  290
            ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| 
Sbjct  84   ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTCTGGTCCT-AGAAAATGGA  142

Query  291  CGCACATTGGAAAGCAAATGCAAGGCAGATCAGGTTAGA  329
            |||| |||||||||||||||||||| ||| ||||| |||
Sbjct  143  CGCAAATTGGAAAGCAAATGCAAGGAAGAACAGGTAAGA  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39419096178


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5