BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40020.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493983 jgi|Araly1|493983|fgenesh2_kg.7__3416__AT5G40020.1 1269 0.0
> Ahg493983 jgi|Araly1|493983|fgenesh2_kg.7__3416__AT5G40020.1
Length=845
Score = 1269 bits (687), Expect = 0.0
Identities = 772/814 (95%), Gaps = 1/814 (0%)
Strand=Plus/Plus
Query 1 GTCAAGTTACAACCAAATTCCAATGAAATTCCAGTCTACCTCCTTGTTACAACTTTTCAT 60
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 GTCAAGTTACAACCAAATTCCAATGAAATTCCACTCTACCTCCCTGTTACAACTTTTCAT 60
Query 61 AATATCGAGTTGTATAGTATATGGCAAAGTAACAAGCCATGAGGTAACGTTTTACGTGCA 120
|||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 61 AATATCGAGTTGTATAGTATATGGCAAAGTTACAAGTCATGAGGTAACATTTTATGTGCA 120
Query 121 AAATAAATGTTCATTTCCGATTTGGCCGGCCGTTGCCCCAAACTCCGGCCATCCGGTGCT 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AAATAAATGTTCATTTCCGATTTGGCCGGCCGTTGCCCCCAACTCCGGCCATCCGGTGCT 180
Query 181 AGCCTCTGGTGGATTTTATCTGCCATGCGGAGGTATTAAACGCATTGATGCTCCTTTGGG 240
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 181 AGCCTCTGGTGGATTTTACCTGCCATGTGGAGGTATTAAACGCATTGATGCTCCTTGGGG 240
Query 241 TTGGAGTGGTCGCATTTGGGCTAGAACAGGCTGTGACTTCACTTCAAACTCGAAACAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTGGAGTGGTCGCATTTGGGCTAGAACAGGCTGTGACTTCACTTCAAACTGGAAACAAGC 300
Query 301 TTGTGAAACAGGTGATTGTGATGGACATCTGGAGTGTAATGGATTAATCGGAAAACCTCC 360
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 301 TTGTGAAACAGGTGATTGTGATGGACATTTGGAGTGTAATGGATTGATCGGAAAACCTCC 360
Query 361 GGCAACACTTATTCAAATTGCGGTACAAGCCGACAAATCCAAACCTAATTTCTACGATGT 420
||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 361 AGCAACCCTTATTCAAATTGCTGTAGAAGCCGACAAATCCAAACCTAATTTCTATGATGT 420
Query 421 AAGCCTCGTGGACGGTTATAATCTTCCCGTCGTAGTGAACTCGAAACCCGTATCATCCAA 480
|||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 421 AAGCCTCGTGGACGGTTACAATCTCCCCGTCGCAGTGAACTCGAAACCCGTATCATCCAA 480
Query 481 ATGCACCATCTTAGGGTGCCATAAAGATCTCAAAACCACATGTCCTGAAGAACTACAGGT 540
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGCAACATCTTAGGATGCCATAAAGATCTCAAAACCACATGTCCTGAAGAACTACAGGT 540
Query 541 TTTGAACGAAGAGGGACGAGTTGTGGCGTGCAAGAGTGCATGTTTAGCGTTTGATAACGA 600
|||||||||||||||| | | ||||| |||||||||||||| ||||| |||||||||||
Sbjct 541 CTTGAACGAAGAGGGACAAATCGTGGCTTGCAAGAGTGCATGCTTAGCATTTGATAACGA 600
Query 601 CAGATTTTGTTGCCGGAATGCATATGGAACGCCGGAAAAGTGCAAAAGAAACACGTACTC 660
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 601 CAGGTTTTGTTGCCGGAATGCGTATGGAACGCCGGAGAAGTGCAAAAGAAACACGTACTC 660
Query 661 TATGTTGTTTAAAGAAGCTTGTCCCAACTATTACAGTTATGCCTACGAGACACCTCCTCC 720
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 661 TATGTTGTTTAAAGAAGCTTGTCCCAATTATTACAGTTATGCGTACGACACACCTCCTCC 720
Query 721 TTTGGTCACTTGCTCCGCCAAGGAATATCTTATCACGTTTTGTCCATCAAACTGGGGCCA 780
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 721 TTTGGTCACTTGCTCCGCCAAGGAATATCTTATCACATTTTGTCCATCAAATTGGGGTCA 780
Query 781 TAGTTCCACGTAAAAATTTTT-AAAAATACGATA 813
|||||||||||||||| ||| ||||||||||||
Sbjct 781 TAGTTCCACGTAAAAAACTTTCAAAAATACGATA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5