BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40030.1 Length=1500 Score E Sequences producing significant alignments: (Bits) Value Ahg355985 jgi|Araly1|355985|fgenesh1_pg.C_scaffold_7003158 2527 0.0 Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1 172 5e-42 > Ahg355985 jgi|Araly1|355985|fgenesh1_pg.C_scaffold_7003158 Length=1503 Score = 2527 bits (1368), Expect = 0.0 Identities = 1459/1503 (97%), Gaps = 5/1503 (0%) Strand=Plus/Plus Query 1 ATGAGTAAACAAACTCCAAATCTTGAA---TCTTTACAAGATTGTTCTTCTTCCAATTAC 57 |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1 ATGAGTAACCAAACTCCAAATCTTGAATCTTCTTTACATGATTGTTCTTCTTCCAATTAC 60 Query 58 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 120 Query 118 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 180 Query 178 AGCAGTGAAGCTAATCTCGAAAAGACTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 237 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 AGCAGTGAAGCTAATCTCGAAAAGTCTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 240 Query 238 AGGGTCTTTGCTCCTTCGAAGCCGCATAAAGGAAACGATCTTAGATGGGACGCGATTCAG 297 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 241 AGGGTCTTTGCTCCTTCGAAGCCACATAAAGGGAACGATCTTAGATGGGACGCGATTCAG 300 Query 298 AATGTGAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAA 357 | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTGTTAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAG 360 Query 358 TTGGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTCAGAGAGATGGGATGTTTC 417 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 TTAGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTTAGAGAGATGGGATGTTTC 420 Query 418 TTTGCTATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAATTGGTTAGAGCT 477 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 TTTGCCATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAACTGGTTAGAGCT 480 Query 478 CAGACTGAGAGAGAGATTTTGGGTTTGTTAGATCATCCTTTCTTGCCTACTCTTTACTCT 537 ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 481 CAGACTGAGAGAGAGATTTTGGGTTTGTTGGATCACCCTTTCTTGCCTACGCTTTACTCT 540 Query 538 CATTTCGAGACTGAGAAGTTTTCTTGCCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 597 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 CATTTCGAGACTGAGAAGTTTTCTTGTCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 600 Query 598 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 660 Query 658 GCTTCTGAAGTACTTCTTGCGCTAGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 717 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 GCTTCTGAAGTACTTCTTGCGCTTGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 720 Query 718 TTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 777 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTGAAACCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 780 Query 778 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCTTCTTGT 837 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 781 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCGTCTTGT 840 Query 838 CATATAGCTTCGTACTGTATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 897 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CATATTGCTTCGTACTGCATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 900 Query 898 GCCTGTATCCAACCATCATGCTTCAAGCCTCGGTTCCTCAACAACAAACCACGAAAGGCG 957 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 901 GCCTGTATCCAACCATCGTGCTTCAAGCCTCGTTTCCTCAACAACAAACCACGAAAGGCG 960 Query 958 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGCTGCT 1017 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 961 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGATGCG 1020 Query 1018 CGATCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1077 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CGGTCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1080 Query 1078 GGTCATGGAAGTTCTGTGGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1137 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGTCATGGAAGTTCTGTTGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1140 Query 1138 GGGAAAACGCCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGACAA 1197 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1141 GGGAAAACACCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGGCAA 1200 Query 1198 CCGCTTAA-GTTTCCGGAAGGATCTATAAGCTTTGCAGCTAAAGATTTGATTAGAGGTTT 1256 ||| |||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1201 CCG-TTAAAGTTTCCCGAAGGATCTATAAGCTTTGCAGCTAAGGATTTGATTCGAGGTTT 1259 Query 1257 GCTAACTAAAGATCCTAAGAAGAGACTAGGGTTCAAGAAAGGTGCTACAGAGATAAAGCA 1316 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1260 GCTAACTAAAGATCCTAAGAAGAGATTAGGATTCAAGAAAGGTGCTACAGAGATAAAGCA 1319 Query 1317 ACATCCTTTCTTCAATAATGTCAATTGGGCTCTAATCAGAAGCACAACCCCACCAGAAAT 1376 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1320 ACATCCTTTCTTCAACAATGTCAATTGGGCTCTAATAAGAAGCACAACCCCACCAGAAAT 1379 Query 1377 ACCGAAACCGATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCAGTTCAACAACA 1436 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1380 ACCGAAACCAATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCGGTTCAACAACA 1439 Query 1437 AGGCAAGCATTCAAAACAATCAGATTCATCATCAGGTCCTTATTTAGATTTTGAGTTCTT 1496 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1440 AGGCAAGCATTCAAAACAATCAGATTCATCATCTGGTCCTTATTTAGATTTTGAGTTCTT 1499 Query 1497 CTA 1499 ||| Sbjct 1500 CTA 1502 > Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1 Length=1298 Score = 172 bits (93), Expect = 5e-42 Identities = 249/321 (78%), Gaps = 23/321 (7%) Strand=Plus/Plus Query 469 GTT-AGAGCTCAGACTGAGAGAGAGATTTTGGGTTTG-TTAGATCATCCTTTCTTGCCTA 526 ||| ||||||||||| ||||||||||| ||| | | || ||||||||||||||||||| Sbjct 267 GTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCTCAGCTT-GATCATCCTTTCTTGCCTA 325 Query 527 CTCTTTACTCTCATTTCGAGACTGAGAAGTTTTCTTGCCTTT-TGATGGAGTTTTGTAGC 585 ||||||||||||| ||||| ||||| || || | |||| || | ||||||||||||||| Sbjct 326 CTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGC-TTGGTCATGGAGTTTTGTAGC 384 Query 586 GGTGGAGATCTTCATATTC-TCCG-G-CAGAAACAGCCCGGAA-AACA-TTTCTCCGAAC 640 || ||| |||| | ||||| | | | ||||| || || || || |||| | ||| Sbjct 385 GGCGGAAATCT-C-TATTCCTT-GAGACAGAAGCAACCT--AACAAGTGTTTCACAGAAG 439 Query 641 TA-GCCGCCAGGTT-TTATGCTTCTGAAGTACTTCTT-GCGCTAGAGTATCTT-CATATG 696 | || || ||||| || ||| || ||||| || || ||| |||||||| || || ||| Sbjct 440 -ACGCTGCAAGGTTCTT-TGCATCAGAAGTG-TTGTTAGCGTTAGAGTAT-TTACACATG 495 Query 697 ATGGGTGTAGTGTACAGAGATTTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCAC 756 | || | || ||| ||||||| ||||||||||| ||| |||| |||| || |||||| Sbjct 496 CTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTTCGAGATGACGGTCAC 555 Query 757 ATTATGCTTTCGGATTTCGAT 777 |||||||| || ||||||||| Sbjct 556 ATTATGCTCTCCGATTTCGAT 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56145021130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5