BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40030.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355985 jgi|Araly1|355985|fgenesh1_pg.C_scaffold_7003158 2527 0.0
Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1 172 5e-42
> Ahg355985 jgi|Araly1|355985|fgenesh1_pg.C_scaffold_7003158
Length=1503
Score = 2527 bits (1368), Expect = 0.0
Identities = 1459/1503 (97%), Gaps = 5/1503 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAAACAAACTCCAAATCTTGAA---TCTTTACAAGATTGTTCTTCTTCCAATTAC 57
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTAACCAAACTCCAAATCTTGAATCTTCTTTACATGATTGTTCTTCTTCCAATTAC 60
Query 58 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 120
Query 118 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 180
Query 178 AGCAGTGAAGCTAATCTCGAAAAGACTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AGCAGTGAAGCTAATCTCGAAAAGTCTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 240
Query 238 AGGGTCTTTGCTCCTTCGAAGCCGCATAAAGGAAACGATCTTAGATGGGACGCGATTCAG 297
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 AGGGTCTTTGCTCCTTCGAAGCCACATAAAGGGAACGATCTTAGATGGGACGCGATTCAG 300
Query 298 AATGTGAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAA 357
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTGTTAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAG 360
Query 358 TTGGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTCAGAGAGATGGGATGTTTC 417
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TTAGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTTAGAGAGATGGGATGTTTC 420
Query 418 TTTGCTATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAATTGGTTAGAGCT 477
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TTTGCCATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAACTGGTTAGAGCT 480
Query 478 CAGACTGAGAGAGAGATTTTGGGTTTGTTAGATCATCCTTTCTTGCCTACTCTTTACTCT 537
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 481 CAGACTGAGAGAGAGATTTTGGGTTTGTTGGATCACCCTTTCTTGCCTACGCTTTACTCT 540
Query 538 CATTTCGAGACTGAGAAGTTTTCTTGCCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CATTTCGAGACTGAGAAGTTTTCTTGTCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 600
Query 598 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 660
Query 658 GCTTCTGAAGTACTTCTTGCGCTAGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 717
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTTCTGAAGTACTTCTTGCGCTTGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 720
Query 718 TTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGAAACCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 780
Query 778 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCTTCTTGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCGTCTTGT 840
Query 838 CATATAGCTTCGTACTGTATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 897
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATATTGCTTCGTACTGCATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 900
Query 898 GCCTGTATCCAACCATCATGCTTCAAGCCTCGGTTCCTCAACAACAAACCACGAAAGGCG 957
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GCCTGTATCCAACCATCGTGCTTCAAGCCTCGTTTCCTCAACAACAAACCACGAAAGGCG 960
Query 958 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGCTGCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGATGCG 1020
Query 1018 CGATCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGGTCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1080
Query 1078 GGTCATGGAAGTTCTGTGGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1137
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGTCATGGAAGTTCTGTTGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1140
Query 1138 GGGAAAACGCCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGACAA 1197
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 GGGAAAACACCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGGCAA 1200
Query 1198 CCGCTTAA-GTTTCCGGAAGGATCTATAAGCTTTGCAGCTAAAGATTTGATTAGAGGTTT 1256
||| |||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1201 CCG-TTAAAGTTTCCCGAAGGATCTATAAGCTTTGCAGCTAAGGATTTGATTCGAGGTTT 1259
Query 1257 GCTAACTAAAGATCCTAAGAAGAGACTAGGGTTCAAGAAAGGTGCTACAGAGATAAAGCA 1316
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1260 GCTAACTAAAGATCCTAAGAAGAGATTAGGATTCAAGAAAGGTGCTACAGAGATAAAGCA 1319
Query 1317 ACATCCTTTCTTCAATAATGTCAATTGGGCTCTAATCAGAAGCACAACCCCACCAGAAAT 1376
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 ACATCCTTTCTTCAACAATGTCAATTGGGCTCTAATAAGAAGCACAACCCCACCAGAAAT 1379
Query 1377 ACCGAAACCGATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCAGTTCAACAACA 1436
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 ACCGAAACCAATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCGGTTCAACAACA 1439
Query 1437 AGGCAAGCATTCAAAACAATCAGATTCATCATCAGGTCCTTATTTAGATTTTGAGTTCTT 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 AGGCAAGCATTCAAAACAATCAGATTCATCATCTGGTCCTTATTTAGATTTTGAGTTCTT 1499
Query 1497 CTA 1499
|||
Sbjct 1500 CTA 1502
> Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1
Length=1298
Score = 172 bits (93), Expect = 5e-42
Identities = 249/321 (78%), Gaps = 23/321 (7%)
Strand=Plus/Plus
Query 469 GTT-AGAGCTCAGACTGAGAGAGAGATTTTGGGTTTG-TTAGATCATCCTTTCTTGCCTA 526
||| ||||||||||| ||||||||||| ||| | | || |||||||||||||||||||
Sbjct 267 GTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCTCAGCTT-GATCATCCTTTCTTGCCTA 325
Query 527 CTCTTTACTCTCATTTCGAGACTGAGAAGTTTTCTTGCCTTT-TGATGGAGTTTTGTAGC 585
||||||||||||| ||||| ||||| || || | |||| || | |||||||||||||||
Sbjct 326 CTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGC-TTGGTCATGGAGTTTTGTAGC 384
Query 586 GGTGGAGATCTTCATATTC-TCCG-G-CAGAAACAGCCCGGAA-AACA-TTTCTCCGAAC 640
|| ||| |||| | ||||| | | | ||||| || || || || |||| | |||
Sbjct 385 GGCGGAAATCT-C-TATTCCTT-GAGACAGAAGCAACCT--AACAAGTGTTTCACAGAAG 439
Query 641 TA-GCCGCCAGGTT-TTATGCTTCTGAAGTACTTCTT-GCGCTAGAGTATCTT-CATATG 696
| || || ||||| || ||| || ||||| || || ||| |||||||| || || |||
Sbjct 440 -ACGCTGCAAGGTTCTT-TGCATCAGAAGTG-TTGTTAGCGTTAGAGTAT-TTACACATG 495
Query 697 ATGGGTGTAGTGTACAGAGATTTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCAC 756
| || | || ||| ||||||| ||||||||||| ||| |||| |||| || ||||||
Sbjct 496 CTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTTCGAGATGACGGTCAC 555
Query 757 ATTATGCTTTCGGATTTCGAT 777
|||||||| || |||||||||
Sbjct 556 ATTATGCTCTCCGATTTCGAT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5