BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40040.1
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493981 jgi|Araly1|493981|fgenesh2_kg.7__3414__AT5G40040.1 809 0.0
> Ahg493981 jgi|Araly1|493981|fgenesh2_kg.7__3414__AT5G40040.1
Length=550
Score = 809 bits (438), Expect = 0.0
Identities = 516/553 (93%), Gaps = 7/553 (1%)
Strand=Plus/Plus
Query 1 CTAATCGCAGTCGATTTGCTTCTTTCAtttttttCAG-aaa-aaaaaGAGAGAGA-A-CG 56
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||
Sbjct 1 CTAATCGCAGTCGATTTGCTTCTTTCATTTTTTTCAGTAAACAAAAAGAGAGAGAGAGCG 60
Query 57 ATGAAGGTTGTTGCGGCGTACCTCCTTGCTAAACTCAGTGGCAATGAGAATCCATCCGTC 116
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 61 ATGAAGGTTGTTGCGGCGTACCTCCTTGCCAAACTCGGCGGCAAAGAGAATCCATCCGTC 120
Query 117 GCTGATCTGAAGAAGATCGTCGAATCTGTTGGTGCAGAGATCGACCAAGAGAAGATAGAT 176
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCTGATCTGAAGAAGGTCTTCGAATCTGTTGGTGCAGAGATTGACCAAGAGAAGATAGAT 180
Query 177 CTGTTCTTCTCTCTGATCAAAGATCGCGATGTGACTGAGCTTATCGCTGTTGGACGAGAG 236
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct 181 CTGTTCTTCTCTCTGATCAAAGATCACGATGTGACTGAGCTTATCGCTATTGGACGTGAG 240
Query 237 AAGATGGCGGCTCTATCTTCCGGTGGTGGTGCGGTTGCGGTTGCTTCTGGTGGAGGAGGT 296
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 241 AAGATGGCGGCTCTTTCTTCCGGTGGTCCTGCGGTTGCGGTTGCTTCTGGTGGAGGCGGT 300
Query 297 GGTGCTGCTCCAGCCGCTGAGCCTGCCTCGGTTGAGTCCAAGAAGAAGGAAGAGGAGAAA 356
||||||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||
Sbjct 301 GGTGCTGCTCCAGCCACTGAGCCTGCGGCGGCTGAGGCAAAGAAGAAGGAAGAGGAGAAA 360
Query 357 GAGGAATCAGAAGATGACGGTGGAATGATGAGTCTCTTCGATTGATCTTGTGATGATGGT 416
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 361 GAGGAATCAGAAGATGACGGTGGAATGATGAGTCTCTTTGATTGATCATGTGATGATGGT 420
Query 417 TGATTGTTTTGATCTGCATTATTATCTTATCGTGTTTTATGttttttttCTTAATTAGGG 476
|| | ||| ||||||| | |||||||||||||||||||||| ||||| |||||||||||
Sbjct 421 AGAATCTTTCGATCTGCGT-ATTATCTTATCGTGTTTTATGTCTTTTT-CTTAATTAGGG 478
Query 477 TTTCTGGATTTTTGTGGTTTCCATGGATTATTATTGTCTTTGGTAACTTGAGTTTGGTGC 536
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TTTCTGGATTTT-GTTGTTTCCATGGATTATTATCGTCTTTGGTAACTTGAGTTTGGTGC 537
Query 537 GAATAAATGATTT 549
|||||||||||||
Sbjct 538 GAATAAATGATTT 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20527706882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5