BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40050.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947770 jgi|Araly1|947770|scaffold_703999.1 279 2e-74
> Ahg947770 jgi|Araly1|947770|scaffold_703999.1
Length=677
Score = 279 bits (151), Expect = 2e-74
Identities = 194/214 (91%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 1036 GGTGGGAATATGGTGAAGGTGGTTGAGATACAA-GAGTATAAAGGAAGACTTGAGGAACT 1094
||||||||| ||||||| ||| ||||||||||| || |||||||||||||||| ||||||
Sbjct 447 GGTGGGAATGTGGTGAAAGTGCTTGAGATACAAGGA-TATAAAGGAAGACTTGGGGAACT 505
Query 1095 GAACCAAGTCAAATGCTTCTTGAGAGAAATGGAGAATCTTGAAGAGGTGAAAGTGAACAC 1154
||||||||| || | ||||||| | | ||||||||||||||||||| ||||||||||||
Sbjct 506 GAACCAAGTGAAGTTCTTCTTGTGGGGAATGGAGAATCTTGAAGAGATGAAAGTGAACAT 565
Query 1155 TAGTGATGAGATCGAGAACAAGTTGCAACTCACAAATGATCTTCTTGCTCTTCTTCCTAA 1214
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 566 TAGTGATGAGATAGAGAACAAGTTGCAACTCACAAATGCTCTTCTTGCTCTTC--CC-AA 622
Query 1215 ACGCTCATCCAAATGCAACATCCATGTCTTGTGA 1248
||| ||||||||||||||||||||||||||||||
Sbjct 623 ACGTTCATCCAAATGCAACATCCATGTCTTGTGA 656
Score = 231 bits (125), Expect = 7e-60
Identities = 294/372 (79%), Gaps = 25/372 (7%)
Strand=Plus/Plus
Query 538 GAAGAATTATACATACATCACATTTACATTGAAGATAGAGA-TGAAGAATTC-AA--CAT 593
|||||||||||||||||||||||||||| ||| |||||||| | |||||| || |||
Sbjct 45 GAAGAATTATACATACATCACATTTACACTGACGATAGAGAATTC-GAATTCGAAGACAT 103
Query 594 TCATACAGCACCTCATTAT--ATAGCC-C-ACAACATAAAGAAACTCACAGTTTGCTACA 649
|| | || ||||| | ||| ||| || | ||||||| |||||||||||| || ||||||
Sbjct 104 TCCTCCAACACCTTACTATTTATA-CCACGACAACATCAAGAAACTCACAATTCGCTACA 162
Query 650 ATA-ACGATGTTCAGGCTCCTCGCATTTTGTCAATCTACACACCAAATCTTGTTTACCTA 708
| |||||| || || ||| | |||| |||||||||||| |||||||| |||||
Sbjct 163 -TCGACGATG---AGTCTTATCGGAATTTGAAAATCTACACACCCAATCTTGTCTACCTC 218
Query 709 GACTACTCTGATTATCTAACTTGTTTA-TAT-AATTCGGAGAATCACTTCAATGATC-TT 765
||||||||||||| | |||||||| | | | ||| | || ||| ||| |||| || ||
Sbjct 219 GACTACTCTGATTCTATAACTTGTG-AGTTTGAAT-CAGAAAATTGCTTAAATG-TCCTT 275
Query 766 TTAGAAGCCCGCCTTGATCTTGCTTTCGCAAGG-GCTGGGAGATGGGGTGATGAACACG- 823
|||||||||||||| |||||| ||||| | || | ||| |||| | | ||||||||
Sbjct 276 TTAGAAGCCCGCCTCAATCTTGTTTTCGGATGGAGATGG-AGATTGAGCAATGAACACAT 334
Query 824 ACACCTGTTTAAAAATCATGAATTCTATCACCAATGTTCAAATCCTTCACCTCTCTTGTT 883
| || |||| ||||||||| |||||||| |||||||| ||||||| ||||||||| ||
Sbjct 335 AAAC-TGTTCCAAAATCATGGATTCTATCTGCAATGTTCGAATCCTTTACCTCTCTTCTT 393
Query 884 TTACTGTTGAGA 895
|||||||||||
Sbjct 394 CTACTGTTGAGA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5