BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40090.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493978 jgi|Araly1|493978|fgenesh2_kg.7__3411__AT5G40090.1 1640 0.0
Ahg947840 jgi|Araly1|947840|scaffold_704069.1 699 0.0
Ahg471970 jgi|Araly1|471970|fgenesh2_kg.1__1924__AT1G17610.1 361 1e-98
Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1 137 2e-31
> Ahg493978 jgi|Araly1|493978|fgenesh2_kg.7__3411__AT5G40090.1
Length=1305
Score = 1640 bits (888), Expect = 0.0
Identities = 1018/1080 (94%), Gaps = 11/1080 (1%)
Strand=Plus/Plus
Query 293 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTACAGATTTA-TCTTTTAATGTGGAA 351
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 230 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTAAAGA-TTACTCTTTTAATGTGGAA 288
Query 352 GAAATATGCAGACAACATCCGGAGAAGGCGCCAAGTTGGAGAACTGCACTTACCAAATTG 411
||||| | | ||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 289 GAAATCTACCGACAATATCCGGAGAAGGCACCAAGTTGGAGAATTGCACTTACCAAATTG 348
Query 412 ACCAACCTTGCCGCTGAGTATCCATTATCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 471
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 ACCAACTTTGCTGCTGAGTATCCATTTTCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 408
Query 472 CTACTCAACCAAATTGCTCGTGACATATCTCTTGTCGTGTTCTACTCCGGATCAAACGAT 531
| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 409 CGGCTCAACCAAATTGTTCATGACATATCTCTTGTCGTGTTCTACTCCGCATCAAACGAT 468
Query 532 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTA 591
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 469 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTAGTTTATGACTTGTTGGCTTTA 528
Query 592 GAAGTTAACAAAGAGGTTCGTACAATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 651
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAGTTAACAAAGAGGTTCGTACCATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 588
Query 652 ACACTTGCAAGGTACATTTATGCAGAGATCTTTGTAAACTTTCAGACACATGTTTTCCTA 711
||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||
Sbjct 589 ACACTTGCAAGGTACATTTATTCAGAGATCTTTGTTAACTTTCGGACAAATGTTTTCCTA 648
Query 712 GATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGAGAAGAAGATCCAACG 771
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 GATAATGTTGAAAATATGAAAGACAAGCTTCTAAAGTTTGAAGGGGAAGAAGATCCAACG 708
Query 772 GTAATAATAAGCTCATATCACGATGGACATGAAATTACCGAAGCAAGGCGTAAACACCGG 831
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 709 GTAATAATAAGCTCATAT---GATGGGCATGAAATTACCGAAGCAAGGCGTAAACACCGG 765
Query 832 AAAATTCTCCTTATCGCTGATGATGTGAACAACATGGAACAAGGGAAGTGGATCATTGAA 891
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 766 AAAGTTCTCCTTATCGCTGATGATGTGAACAACATCAAACAAGGGAAGTGGATCATTGAA 825
Query 892 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGAATTTG 951
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 826 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGCATTTG 885
Query 952 CTTGTTGACGCCGGAGTGATG-GATGTGTACGAAGTCAGATCTTTAAGATATGATGAAGC 1010
||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 886 CTTGTTGACGCCGGAGTGA-GCCATGTGTATGAAGTCAGATCTTTAAGATATGATGAAGC 944
Query 1011 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAAGA 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 945 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAACA 1004
Query 1071 GCTCGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1130
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GCTTGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1064
Query 1131 GTCGTTTTTAGCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1190
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATCGTTTTTATCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1124
Query 1191 AAAGCAAGGTGGACATATAATGGAAGTGTGGAAACTTATGGAAGCAA-CAGACGATAAAG 1249
||||||||||||| |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1125 AAAGCAAGGTGGAAATATAATGGAAGTGTGGAAACTTATGGA-GCCATCAGACGATAAAG 1183
Query 1250 GCCTAGAGGAGTGGGAAACTGCAGCCGATATAGTGGAAAGGAAGGAATCATCACAAGATA 1309
||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||| |
Sbjct 1184 GCCAAGAGGAGTGGGAAACTGCAGCAGACATAGTGGAAGGGAAGGAATTATCACAAGACA 1243
Query 1310 AAAGTCAACAAGAGAGTGAAGTTGCTGCAGACATTTTG-ATAGGAAAGGAATCATCACAA 1368
|| ||||| | ||||| ||||||||||||| ||| | | ||| |||||||||||||||
Sbjct 1244 AAGGTCAAGAGGAGAGGGAAGTTGCTGCAGGCATAACGGA-AGGGAAGGAATCATCACAA 1302
Score = 148 bits (80), Expect = 9e-35
Identities = 100/109 (92%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 7 TCTGCTTCTTCATCTTCTGCTGCTTCTTTGTTGC---TTGGAAGGGAGGTGGATGTCTTC 63
||| ||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 4 TCTTCTTCTCCATCTTCTTCTGCTTCTTTGTTGCTAATTGGAACGGAGGTGGATGTCTTC 63
Query 64 CTGAGTTTCTGCTGCCAGACTAGCCATGGATATTTTCAAAATATTTTGA 112
||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 64 CTGAGTTTCTGCTGCGAGACTAGCCATGGATATTTTCATAATATTTTGA 112
Score = 137 bits (74), Expect = 2e-31
Identities = 104/117 (89%), Gaps = 8/117 (7%)
Strand=Plus/Plus
Query 147 ATGCTTGGAGAAGAGATTCGGACCAATTGGT---C--A---ACGGACACTCAAGGCTTTG 198
||||||||||| ||||||||||||||||| | | | |||||||||||||||||||
Sbjct 113 ATGCTTGGAGACGAGATTCGGACCAATTGCTCAACGGACTTACGGACACTCAAGGCTTTG 172
Query 199 GAAGAGTCGAGAGTCGCGGTTGTTATGACCTCTACGACGAAACCTTGCTCCGTTGGC 255
|||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 173 GAAGAGTCGAGAGTCGCGATTGTTATGACCTCTGCGACGAAACCTTGTTCCGTTGGC 229
> Ahg947840 jgi|Araly1|947840|scaffold_704069.1
Length=602
Score = 699 bits (378), Expect = 0.0
Identities = 445/476 (93%), Gaps = 9/476 (2%)
Strand=Plus/Plus
Query 533 CGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTAG 67
Query 593 AAGTTAACAAAGAGGTTCGTACAATTGGCATTTGGGGTAGT-G-CT---GGTGTTG---- 643
|||||||||||||||||||||| |||||||||||||||||| | | ||||| |
Sbjct 68 AAGTTAACAAAGAGGTTCGTACCATTGGCATTTGGGGTAGTAGTATAAGGGTGTCGCAAA 127
Query 644 GGAAGACAACACTTGCAAGGTACATTTATGCAGAGATCTTTGTAAACTTTCAGACACATG 703
|||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 128 GGAAGACAACGTTTGCAAGGTACATTTATTCAGAGATGTTTGTTAACTTTCAGACATATG 187
Query 704 TTTTCCTAGATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGAGAAGAAG 763
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 188 TTTTCCTAGATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGGGAAGAAG 247
Query 764 ATCCAACGGTAATAATAAGCTCATATCACGATGGACATGAAATTACCGAAGCAAGGCGTA 823
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 248 ATCCAACGGTAATAATAAGCTCATATCACGATGGGCATGAAATTAACGAAGCAAGGCGTA 307
Query 824 AACACCGGAAAATTCTCCTTATCGCTGATGATGTGAACAACATGGAACAAGGGAAGTGGA 883
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 308 AACACCGGAAAGTTCTCCTTATCGCTGATGATGTGAACAACATCGAACAAGGGAAGTGGA 367
Query 884 TCATTGAATATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACA 943
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 368 TCATTGAATACGCTAACTGGTTTGCTCCAGGAAGCAGAATCATTCTTATTAGCCAGAACA 427
Query 944 AGAATTTGCTTGTTGACGCCGGAGTGATGGATGTGTACGAAGTCAGATCTTTAAGA 999
||||| ||||||||||||||||||||| | ||||||| ||||||| |||||| |||
Sbjct 428 AGAATATGCTTGTTGACGCCGGAGTGAAGCATGTGTATGAAGTCACATCTTTCAGA 483
> Ahg471970 jgi|Araly1|471970|fgenesh2_kg.1__1924__AT1G17610.1
Length=1137
Score = 361 bits (195), Expect = 1e-98
Identities = 373/458 (81%), Gaps = 16/458 (3%)
Strand=Plus/Plus
Query 800 ATGAAATTACCGAAGCAAGGCGTAAACACCGGAAAATTCTCCTT-ATCGCTGATGATGTG 858
||||||| ||||||||| | |||||||||||| |||| || || ||||||| ||||
Sbjct 662 ATGAAATGGCCGAAGCAAAGAAAAAACACCGGAAAGTTCT-TTTGATAGCTGATGGTGTG 720
Query 859 AACAACATGGAACAAGGGAAGTGGATCATTGAATATGCTAACTGGTTTGCTCCAGGAAGC 918
|| ||||| |||||||||||||||||| ||| || || || ||||||||||||||||||
Sbjct 721 AATAACATTGAACAAGGGAAGTGGATCGCTGAGTACGCCAAGTGGTTTGCTCCAGGAAGC 780
Query 919 AGAGTCATTCTTATTAGC-CA-GAACAAGAA-TTTGCTTGTTGACGCCGGAGTGA-TGGA 974
||||||||||| || || || ||| || || ||||||||| || | ||||||| | |
Sbjct 781 AGAGTCATTCTAATC-GCTCAAGAA-AA-AAGTTTGCTTGTGGAATCTGGAGTGAATC-A 836
Query 975 TGTGTACGAAGTCAGATCTTTAAGATATGATGAAGCTCTTCAAGTCTTCTCTCATTTTGC 1034
|||||| ||||| | ||| ||||||| ||||||||||| ||| ||||||| | ||||||
Sbjct 837 TGTGTATGAAGTTGGTTCTCTAAGATACGATGAAGCTCTCCAACTCTTCTCACGTTTTGC 896
Query 1035 TTTCAAGCAGCCTTATCCACCTTCTGATTTCGAAGAGC-TCGCAGTTCGTGCTGTCCATC 1093
||||| |||| | ||||| ||| ||||||||||| || || | |||||||||||||| |
Sbjct 897 TTTCACGCAGTCATATCCTCCTCCTGATTTCGAAC-GCCTCTCGGTTCGTGCTGTCCAGC 955
Query 1094 TCGCAGGCTTTCTTCCTTTGGGCC-TTAGACTGTTAGGGTCGTTTTTAGCTGGTAAAGGT 1152
| ||||| ||||||||| ||| || |||||||||| || ||||||||| ||||| || |
Sbjct 956 TTGCAGGGTTTCTTCCTGTGG-CCATTAGACTGTTTGGTTCGTTTTTAAATGGTAGAGAT 1014
Query 1153 CGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGCAAAGCAAGGTGGACATATAATG 1212
|||||| |||| |||| ||||||| |||||||| |||||||||||| | | |||| |
Sbjct 1015 AAAGAGGAATGGGAAGCTACACTGCTTAAACTCAATGCAAAGCAAGGTAAAGACATAACG 1074
Query 1213 GAAGTGTGGAA-ACTTATGGAAGCAACAGACGATAAAG 1249
||||||||||| | ||||||| ||| ||| |||||||
Sbjct 1075 GAAGTGTGGAAGA-TTATGGAGGCATTAGAAGATAAAG 1111
> Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1
Length=492
Score = 137 bits (74), Expect = 2e-31
Identities = 100/112 (89%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 1441 AAG-CTTCCTCACTAAGCTTTAAGTTAGGACTCTGTTCTTCTATTATCCTTAATCCTTTT 1499
||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 329 AAGTCTTCTTCATTAAGCTTTAAGTTAGGACTCTGTTCTTCTTTTATCCTTAATCCTTTT 388
Query 1500 TTGTGCTATTCTAAAAATGGTAGATTTGGTTTGATATTTTCACGAAACGATA 1551
|||||||||| ||||||| ||||||||| |||||| |||| |||| ||||
Sbjct 389 --GTGCTATTCTCAAAATGGGAGATTTGGTCTGATATATTCATGAAATGATA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5