BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40100.1
Length=3101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947767 jgi|Araly1|947767|scaffold_703996.1 2165 0.0
Ahg471969 jgi|Araly1|471969|fgenesh2_kg.1__1923__AT1G17600.1 1219 0.0
> Ahg947767 jgi|Araly1|947767|scaffold_703996.1
Length=3002
Score = 2165 bits (1172), Expect = 0.0
Identities = 1298/1360 (95%), Gaps = 4/1360 (0%)
Strand=Plus/Plus
Query 23 CTCTTCTAAGCCAAGGTCTTT-GACAATGGCTTCCTCATCCGCATCTCGTGCATCCAGCT 81
|||||| || |||| || ||| |||||||||||||||||| || ||||||||||||| ||
Sbjct 1 CTCTTCCAAACCAA-GTTTTTCGACAATGGCTTCCTCATCTGCTTCTCGTGCATCCAACT 59
Query 82 ATGATGTCTTCTTAAGTTTCCGTGGGGAAGACACTCGACATTCTATCGTCAGCCATTTGT 141
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATGATGTCTTCCTAAGTTTCCGTGGGGAAGACACTCGACATTCTATCGTCAGCCATTTGT 119
Query 142 ACGAAGCACTTACCAGCAGAGGAATTGCTACCTTCAAAGACGACAAAAGGCTTGAGCTAG 201
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 ACGAAGCACTTACCAGCAGAGGAATTGCTACATTCAAAGACGACAAAAGGCTTGAGCTAG 179
Query 202 GTGATCACATTTCTGAAGAACTCCAAAGAGCCATTGAGGGTTCAGATTTTGTTGTCGTGG 261
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 180 GCGATCACATTTCTGAAGAACTCCAAAGAGCCATTGAGGGTTCAGATTTCGCTGTCGTGG 239
Query 262 TTCTCTCAGAGAACTACCCTACTTCTAGGTGGTGCTTAATGGAGCTCCAATCGATAATGG 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCTCTCAGAGAACTACCCTACTTCTAGGTGGTGCTTAATGGAGCTCCAATCGATAATGA 299
Query 322 AGCTTCAGATGGAGGGAAGACTTGGTGTCTTTCCCGTCTTCTACAGAGTAGAACCCTCTG 381
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 AGCTTCAGGTGGAGGGAAGACTTGGTGTCTTTCCCGTCTTCTACAGTGTAGAACCCTCTG 359
Query 382 CAGTGAGGTATCAGCTAGGAAGTTTCGATCTAGAAGGGTACCAACGTGATCCACAAA-TG 440
| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||
Sbjct 360 CCGTGAGGTATCAGCTAGGAAGTTTCGATCTTGAAGAGTACCAACGTGATCCA-AAACTG 418
Query 441 GCTGATATGGTTCCCAAGTGGAGACAAGCTCTTAAACTGATTGCCGATCTTTCAGGCGTG 500
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 GCGGATGTGGTTCCCAAGTGGAGACAAGCTCTTAAACTGATTGCTGATCTTTCAGGCGTG 478
Query 501 GCATCGGGACAATGCATTGATGAGGCAACTATGGTTCGGAAAATTGTCGAAGATATTTCA 560
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCATCCGGACAGTGCATTGATGAGGCAACTATGGTTCGGAAAATTGTCGAAGATATTTCA 538
Query 561 AAGCGCAAGACATTGAAGCATAAGATAGATTTCAGAAATTTTGTTGGTGTGGATACTCAC 620
| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 539 AGGCGCAAGACATTGAAGCATAAGATAGACTTCAGAAATATTGTTGGGGTGGATACTCAC 598
Query 621 CTGCAAGGTCTCAAGTCGCTCTTGGACATGGACTCCAATAATGATGAGGTTCGTATGATT 680
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGCAAGGTCTCAAGTTGCTCTTGGACATGGACTCCAATAATGATGAGGTTCGTATGATT 658
Query 681 GGAATATGGGGAATGGGAGGCATTGGAAAAACCACCATCGCCAAGTGTCTCTATGACCAG 740
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 GGAATCTGGGGAATGGGAGGCATTGGAAAAACCACCATCGCCAAGTGTCTTTATGACCAG 718
Query 741 CTCTCATCACAATTTACAGCTAGTTATTTCACACAAGACATTAAAGGTATTCATAAAGAG 800
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 CTCTCATCTCAATTTACAACTAGTTATTTCACACAAGACATTAAGGGTATTCATAAAGAC 778
Query 801 CTTGATCTACTGCATTTGCAAAACAGACTTCTCTACAATACCCTCGGTGATGATATTATG 860
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 779 CTTGATCTACTGCATTTGCAAAACAAACTTCTCTACAATACCCTTGGTGATGATATTAGG 838
Query 861 CCGTGGAGTGTGGAAGCTGGACGCGAGGTCATAGCGGCAAGACTTGGGAACCACAAGGTT 920
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 CCGTGGAGCGTGGAAGCTGGACGCGAGGTCATAGCGTCAAGACTTGGGAACCACAAGGTT 898
Query 921 CTTCTTGTGCTTGATGGTGTGGATAAACTGGTACAGATCCATGCTCTGGCAAAAGAGACA 980
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 899 CTTCTTGTACTTGATGGTGTGGATAAATTGGCCCAGATCCATGCTCTGGCAAAAGAGACG 958
Query 981 AGATGGTTTGGTCGTCAGAGCCGAATCATCATAACCACCCGAGACAAGGGCTTGCTCAAT 1040
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 GGATGGTTTGGTCGTCAGAGCCGAATCATCATAACCACCCGAGATAAGGGCTTGCTCAAT 1018
Query 1041 AGTTGTGGAGTAAAAACCATCTATGATGTTAAGTGCTTGGACGACAAGGATTCCCTGCAG 1100
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||
Sbjct 1019 AGTTGTGGAGTAAAAACCATTTATGATGTTAAATGCTTGGACGATAAGGATTCCTTGCAG 1078
Query 1101 ATGTTTAAACAGATTGCTTTTGAAGGAGGCAGTCCTCCTTCTGTTGATTTTGAACAGCTC 1160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 ATGTTTAAACAGATTGCTTTTGAAGGAGGCAGTCCTCCTTCTGTTGATTTTGAACAACTC 1138
Query 1161 TCAATCCGAGCAGCTCGGCTTGCGCACGGGCTTCCTTCTGCCCTTCAAGCCTATGCCTTA 1220
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCAATCCGAGCAGCTCGGCTTGCTCACGGGCTTCCTTCTGCCCTTCAAGCCTATGCCTTA 1198
Query 1221 TTTCTCCGTGGAAGGGCCAACTCTCCTGAAGAATGGGAAGAAGCAGTATGTGGACTTGAA 1280
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1199 TTTCTCCGCAGAAGGGCCAACTCTCCTGAGGAATGGGAAGAAGCAGTATGTGGACTTGAA 1258
Query 1281 AGTACTCCTGACGAGAATATAATGGAAATCCTGAAAATTAGCTACGAGGGTTTAGCAAAA 1340
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1259 AGTACTCCTGACGACAATATAATGGAAATCTTGAAAATTAGCTACGAGGGCTTAGCAAAA 1318
Query 1341 GCACATCAGAATGCTTTTCTCCATGTTGCATGTCTCTTTA 1380
||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GCACATCAGAATGCTTTTCTCCATGTTGCATGTCTCTTTA 1358
Score = 1151 bits (623), Expect = 0.0
Identities = 759/825 (92%), Gaps = 8/825 (1%)
Strand=Plus/Plus
Query 1904 TCATTTGAGGAAACTAGATGTGACGGGATCTAAGAATCTCAAACAACTTCCAGATCTTTC 1963
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TCATTTGAAGAAACTAGATGTGACGGGATCTAAGAATCTCAAACAACTTCCAGATCTTTC 1860
Query 1964 ATGT-GCCGAGGAGCTTGACGAGTTGCTTCTAGAACAATGCAAGAGACTAAAAGGAATTC 2022
|||| || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1861 ATGTAACC-AGAAGCTTGACGAGTTGATTCTAGAACAATGCAAGAGACTAAAAGGAATTC 1919
Query 2023 CAGAGTCCATTGCAGAGAGGTCTACCCTAGGCAGGCTTAATCTATCATACTACGGTGGGG 2082
||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1920 CAGAGTCAATTGGAGAAAGGTCTACCTTAGGCAGGCTTAACCTATCATACTACGGTGGGC 1979
Query 2083 CTAAGAATCCCATGGGTGTTGTTATACAGAAAGTTTCTCAGACGCAACGTATTACATTGT 2142
|||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1980 CTAAGAGTCCCATGGGTGTTGTTATACGGAAAGTGTCTCAGACGCAACGTATTACATTGG 2039
Query 2143 TGTTCCCAACTTCAAGCGTGGAAATGCAACTTATGAATATATCAATCACGGGAGACATT- 2201
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2040 AGTTCCCAACTGCAAGCGTGGAAATGCAACTTATGAATATGTCAATCATGGGAGACATTA 2099
Query 2202 AGATTTCGTGTTTTTGCAGATTTTGAAGGATATGCTGAATACTTCTCCTTTAGTACTGAG 2261
|| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 AG-TTTCGTATTTTCACAGATTTTGAAGGATATGCTGAATACTTCTCCTTTAGTACTGAG 2158
Query 2262 CAAAAGATCCATGCTACAAGGACAGTAAGTGTCCACCAAGCTCCTCGGCTCATCTCGGAG 2321
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2159 CAAAAGATCCATGCTACAAGGACAGTAAGTGTCCACCAAGCTCCTCGGCTCGTCTCGGAG 2218
Query 2322 CTTAACAAATCTACTACACTCAATATCAGGAGGTTCAGCTACAAAGAGAACGGTCGACCT 2381
|| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2219 CTCAACAAATCTACTTCGCTCAATATCAGGAGGTTCAGCTACAAAGAGAACATTCGACCT 2278
Query 2382 GTCAC-TTTACACAGCTTTCCAGATATTCCTGGCCTGAAACAGCTAGAACTAGTCAACTT 2440
||||| ||| ||||| |||||| |||| |||| |||| || ||||| |||||||||||||
Sbjct 2279 GTCACCTTT-CACAGTTTTCCATATATACCTGCCCTGGAAGAGCTAAAACTAGTCAACTT 2337
Query 2441 AAACATCCAAAAACTGTCAGATGGGATTGGTCACTTTGAGTTCCTAGAAAATCTGGATCT 2500
||| ||||||||||| |||||||||||||||||||| || |||||||||| ||||| ||
Sbjct 2338 AAATATCCAAAAACTATCAGATGGGATTGGTCACTTGGAACTCCTAGAAAAACTGGA-CT 2396
Query 2501 -CAGCGGAAATGATTTTGAGAATTTACCAGAAGATATGAATAGACTTTCCCGATTGAAAA 2559
||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||
Sbjct 2397 TCAGCGGAAATGATTTTGAGAACTTACCAGAAGATATGAATAGACTTTCTCGGCTAAAAA 2456
Query 2560 CTCTCTGTCTCCGAAACTGCAGCAAACTCAAGGAATTGCCAGAGCTAACTCAGGTGCAGT 2619
|||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2457 CTCTCTGTCTTCGAAACTGGAGCAAACTCAAGGAATTGCTAGAGCTAACTCAGGTGCAGT 2516
Query 2620 CACTCACTCTTTCTAACTGTAAGAACCTCAGATCTTTGGTGAAAATCTCTGATGCAAGTC 2679
||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||||
Sbjct 2517 CACTCACTCTTTCCAACTGTAGGAGCCTCAGATCATTGGTGAAACCCTCTGATGCAAGTC 2576
Query 2680 AAGATCCAAGCTTATACAGTTTGCTTGAGCTTTGCCTTGACAACT 2724
||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 2577 AAGATCCGGGCATATACTGTTTGCTTGAGCTTTGCCTTGACAACT 2621
Score = 425 bits (230), Expect = 8e-118
Identities = 290/319 (91%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 2785 ATCTCAGCAGCCATGACTTTAAGAAACTGCCATCAAGCATCAGAGATCTTACCTCATTGG 2844
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2622 ATCTCAGCAGCCATGACTTTAAGACACTGCCAGCAAGCATCAGAGATCTTACCTCATTGG 2681
Query 2845 TAACTCTCTGCCTGAATAACTGCAAGAAACTCAAATCACTGGAAGAACTCCCACTGAGCC 2904
||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2682 TAACTCTCTGCCTCAATAACTGCAAGAAACTCAAATCGGTGGAAGAACTTCCACTGAGCC 2741
Query 2905 TCCAGTTTCTCGACGCAAAGGGTTGTGATTCTCTTGAAGCTGATGATTTAGAACATTTCA 2964
| || ||||| || ||| ||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2742 TTCAATTTCTAGATGCACAGGGTTGTGATTCTCTTGAAGCTGATGCTTTAGAACATTTTA 2801
Query 2965 AAGGGAGAGTAAACAGAGAGGTATCAGCACAACC-ACATAGTGCTCGCTTCCAAGAAACG 3023
||| |||| |||||| ||||||| ||||||| || | ||||||||||||||||||||||
Sbjct 2802 AAGAGAGACTAAACAAAGAGGTACCAGCACATCCGAG-TAGTGCTCGCTTCCAAGAAACG 2860
Query 3024 GAGATGCCAAGTTACGAGCAGGATCACCAAGCCAGAAAGA-GTCGCCTACCCAAGTTCCT 3082
||||| | |||||||| |||||||||||||||| ||| | |||||||||||||||||||
Sbjct 2861 CAGATGACGAGTTACGAACAGGATCACCAAGCCACAAAAAAGTCGCCTACCCAAGTTCCT 2920
Query 3083 ATGCTGCTCATATTTCTAG 3101
|||||||||| ||||||||
Sbjct 2921 ATGCTGCTCACATTTCTAG 2939
Score = 305 bits (165), Expect = 1e-81
Identities = 214/238 (90%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1659 ACCGGTGTTTTTAGCAGAATGTATAAACTTAGGTTTTTAAAGGTCTACAAGCATGTTAAC 1718
|||||||||||| ||| |||| |||||||||||||| | ||||| |||||||||||| ||
Sbjct 1514 ACCGGTGTTTTTGGCAAAATGAATAAACTTAGGTTTGTCAAGGTTTACAAGCATGTTGAC 1573
Query 1719 GAGAGAGAATCGATGTTGCAGGTGATTCCTGAAGATGAATACCCTTCCATAAATTGT-CT 1777
|| |||| ||||| | |||||||||||| ||||||| ||||||||||||| ||| || |
Sbjct 1574 GACAGAGGATCGAGGCTGCAGGTGATTCGTGAAGATCAATACCCTTCCATGAATGGTAC- 1632
Query 1778 CCTACTCCATTGGGACGCATTTCCATTGAGCAAATTTCCTCTCAGGTTTAATACATATTG 1837
||||||||| |||||||||||||||||||||| ||| ||| ||| |||||| ||||||||
Sbjct 1633 CCTACTCCACTGGGACGCATTTCCATTGAGCACATTGCCTTTCACGTTTAACACATATTG 1692
Query 1838 TCTTGTTGAACTCAATCTGCGTCACAGCAACCTAGAAACACTCTGGAGTGGAGTACTG 1895
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TCTTGTTGAACTCATTCTGCGTCACAGCAACCTAGAAACACTCTGGAGTGGAGTACTG 1750
> Ahg471969 jgi|Araly1|471969|fgenesh2_kg.1__1923__AT1G17600.1
Length=2892
Score = 1219 bits (660), Expect = 0.0
Identities = 1641/2098 (78%), Gaps = 134/2098 (6%)
Strand=Plus/Plus
Query 48 ATGGCTTCCTCATCCGCATCTCGTGCATC-CAGCTATGATGTCTTCTTAAGTTTCCGTGG 106
||||| ||||| || ||| |||||| ||| || || || |||||| | || ||||| ||
Sbjct 1 ATGGCGTCCTCCTCTGCACCTCGTGTATCGAAG-TACGACGTCTTCCTCAGCTTCCGAGG 59
Query 107 GGAAGACACTCGACATTCTATCGTCAGCCATTTGTACGAAGCACTT-ACCAGCAGAGGAA 165
|||||||| ||| | | ||||| || ||||| |||| ||||||| | ||||||||||
Sbjct 60 AGAAGACACCCGAAAAACAATCGTTAGTCATTTATACGCAGCACTTGA-TAGCAGAGGAA 118
Query 166 TTGCTACCTTCAAAGACGACAAAAGGCTTGAGCTAGGTGATCACATTTCTGAAGAACTCC 225
||| ||| |||||||||||| ||||||||||| |||| |||||||||||||| |||||||
Sbjct 119 TTGTTACTTTCAAAGACGACCAAAGGCTTGAGATAGGAGATCACATTTCTGATGAACTCC 178
Query 226 AAAGAGCCA-TTGAGG-GTTCAGA-TTTTGTTGTCGTGGTTCTCTCAGAGAACTACCCTA 282
|||| || | | || |||| || ||| | ||| ||||||||||| ||||||||| |||
Sbjct 179 GCAGAG-CACTAG-GGAGTTC-GAGTTTCGCTGTTGTGGTTCTCTCCGAGAACTACGCTA 235
Query 283 CTTCTAGGTGGTGCTTAATGGAGCTCCAATC-GATAATGGAGCTTCA-GATGGAGGGAAG 340
|||| |||||||||||| |||| || ||| | ||||||||||||| | || ||||||||
Sbjct 236 CTTCCAGGTGGTGCTTATTGGAACTTCAA-CTGATAATGGAGCTT-ATGAAAGAGGGAAG 293
Query 341 ACTTGGTGTCTTTCCCGTCTTCTACAGAGTAGAACCCTCTGCAGTGAGGTATCAGCTAGG 400
||||| || |||||| ||||||| ||||||| || || | |||||| ||||||||||
Sbjct 294 ACTTGAAGTATTTCCCATCTTCTATGGAGTAGATCCTTCCGTGGTGAGGCATCAGCTAGG 353
Query 401 AAGTTTCGATCTAGAAGGGTACCAACGTGATCCACAAATGGCTGATATGGTTCCCAAGTG 460
|||||||| | ||||| ||| ||| | | ||| ||||||| |||| ||||| || |||
Sbjct 354 AAGTTTCGCTTTAGAAAAGTATCAA-G-G-TCCTGAAATGGCGGATAAGGTTCTCAGGTG 410
Query 461 GAGACAAGCTCTTAAACTGATTGCCGATCTTTCAGGCGTGGCATCGGGACAATGCATTGA 520
|||| |||||||||| || || ||| ||||||||||||||| || | || ||| ||||
Sbjct 411 GAGAGAAGCTCTTAACCTAATCGCCAATCTTTCAGGCGTGGTTTCAAGCCACTGCGTTGA 470
Query 521 TGAGGCAACT-ATGGTTCGGA-AAATTGTCGA-AGATATTTCAAAG-CGCAAGACATTGA 576
|||||| | | |||||| ||| |||||| | | ||||||||| ||| || |||||||
Sbjct 471 TGAGGCTA-TAATGGTT-GGAGAAATTG-CCAGAGATATTTC-AAGACGTGTGACATTGT 526
Query 577 AGCATAAGATAGATTTC-AGAAATTTTGTTGGTG-TGGATA-CTCACCTGCAAGGTCTCA 633
|||||| ||||| || | ||| ||||||| | | || | ||||| || ||||||| |
Sbjct 527 TGCATAAAATAGA-CTCTGGCAATATTGTTGG-GAT-GAAAGCTCACATGGAAGGTCTTA 583
Query 634 AGTC-GCTCTTGGA-CATGGACTCCAATAATGATGAGGTTCGT-ATGATTGGAATATGGG 690
| || | |||||| | |||| ||| | ||||||||| | ||| | ||||| ||||
Sbjct 584 A-TCATCGCTTGGATC-TGGAATCC----A--ATGAGGTTC-TCATGGTAGGAATCTGGG 634
Query 691 GAATGGGAGGCATTGGAAAAACCACCATCGCCAAGTGTCTCTATGACCAGCTCTCATC-A 749
|||||||||| ||||| |||||| |||| || |||||||||||||||||||| ||| | |
Sbjct 635 GAATGGGAGGAATTGGGAAAACCTCCATTGCTAAGTGTCTCTATGACCAGCTTTCACCTA 694
Query 750 CAATTTACAGCT-AGTTATTTCACACAAGACATTAAAG-GTATTCA-TAAAG--A---G- 800
||||| ||||| | || ||||||| || ||||| ||| || || | ||||| | |
Sbjct 695 -AATTTCCAGCTCA-TTGTTTCACAGAAAACATT-AAGAGTGTT-AGTAAAGATATTGGC 750
Query 801 CTTGATCTACTGCATTTGCAAAACAG-ACTTCTCTACAATACCCTCGGTGATGATATTAT 859
| ||||||| || ||||||||| || | | |||| ||||| |||| ||||||||||||
Sbjct 751 CATGATCTAAAGCGTTTGCAAAA-AGAAATGCTCTGCAATATCCTCTGTGATGATATTAG 809
Query 860 GCCGTGGAGTGTGGAAGCTGGACGCGAGGTCATAGCGGCA-AGACTTGGGAACCACAAGG 918
| ||||| |||||||||||| || | | ||| | | ||||||||||| || | ||
Sbjct 810 GTTATGGAGCGTGGAAGCTGGATGCCAAGAGATA-AAGAAGAGACTTGGGAATCAGAGGG 868
Query 919 TTCTTCTTGTGCTTGATGGTGTGGATAAACTGGT-ACAGATCCATGCTCTGGCAAAAGAG 977
|| ||||||||||||| |||||||||||| | || |||| | |||||| ||||||||||
Sbjct 869 TTTTTCTTGTGCTTGACGGTGTGGATAAAGT-GTCACAGGTGCATGCTTTGGCAAAAGAT 927
Query 978 ACAAGA-TGGTTTGGTCGTCAGAGCCGAATCATCATAACCACCCGAGACAAGGGCTTGCT 1036
| || | |||||||||| | ||||||||| |||||||| || ||||| | |||||||||
Sbjct 928 A-AAAACTGGTTTGGTCCTGGGAGCCGAATTATCATAACTACTCGAGATATGGGCTTGCT 986
Query 1037 CAATAGTTGTGGAGTAAAAACCATCTATGATGTTAAGTGCTTGGACGACAAGGATTCCCT 1096
||||| ||||||||| ||| | | ||||| |||||||||||||| || |||||| ||||
Sbjct 987 CAATACCTGTGGAGTAGAAATCGTTTATGAGGTTAAGTGCTTGGATGATAAGGATGCCCT 1046
Query 1097 GCAGATGTTTAAACAGATTGCTTTTGAAGGAGGCAGTCCTCCTTCTGTT-GATTTTGAAC 1155
|| ||||||||||||||||||||||||||||| | | |||| ||| | | |||||| |
Sbjct 1047 CCACATGTTTAAACAGATTGCTTTTGAAGGAGG-ACT--TCCTCCTGATAG-TTTTGAGC 1102
Query 1156 AGCTCTCAATCCGAGCAGCTCGGCTTGCGCACGGGCTTCCTTCTGCCCTTCAAGCCTATG 1215
| |||||| ||||||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1103 AACTCTCACTCCGAGCTTCTCGGCTTGCTCACGGGCTTCCTTCTGCCATTCAAGCTTATG 1162
Query 1216 CCTTATTTCTCCGTGGAAGGGCCAACT-CTCCTGAAGAATGGGAAGAAGCAGT-ATGTGG 1273
|||||||||||||||||||| || | ||||||| | |||||||||||| | | |||
Sbjct 1163 CCTTATTTCTCCGTGGAAGGACCG-CGACTCCTGATGGGTGGGAAGAAGCATTGA-GTGC 1220
Query 1274 ACTTGAAAGTACTCCTGACGAGAATATAATGGAAATCCTGAAAATTAGCTACGAGGGTTT 1333
||||||||| | || |||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 1221 ACTTGAAAGCAGTCTTGACGAGAATATAATGGAAATCTTGAAAATCAGCTACGAGGGCTT 1280
Query 1334 AGCAAAAGCACATCAGAATGCTTTTC-TCCATGTTG-CATGTCTCTTTAATGGAGACACT 1391
| ||||| |||||||||||| | ||| | ||||||| | |||||||| ||||||||||||
Sbjct 1281 ACCAAAACCACATCAGAATG-TATTCCTTCATGTTGTC-TGTCTCTTCAATGGAGACACT 1338
Query 1392 TTCCGGCGTGTCACTTCACTACTTGATGTTAGCAGAA-TGGAAAGTAACTTGTGGATGAG 1450
||| |||| ||||||| || ||| ||| || | | | |||| | ||||||| ||
Sbjct 1339 CTCCAGCGTATCACTTCCCTTCTTCATGGCCCCATACCTC-AGAGTAGCCTGTGGATAAG 1397
Query 1451 AGTTTTAGCAGAGAAATCTCTCATCAATATAACAAGTAATGGATATGTAACCCTGCATAA 1510
||||||||||||||||||||||||||| ||| ||| |||||||| ||||| | |||| ||
Sbjct 1398 AGTTTTAGCAGAGAAATCTCTCATCAAAATATCAACTAATGGATCTGTAATCATGCACAA 1457
Query 1511 GTTGGTTGAACAAATGGGAAGAGAAATTAT--GC-----T-TGCCAGTGG----AAAATT 1558
|||||| ||||||||||| ||||||||||| || | || | ||| ||||||
Sbjct 1458 GTTGGTAGAACAAATGGGTAGAGAAATTATCCGCGACAATATGTCTTTGGCTCGAAAATT 1517
Query 1559 CATCGGGGATCCGGA-G-ACAATTCATGATAC-T---CTTG--GA-ATG--GGA---CAA 1604
| || ||||||| | | | ||||| |||| | | ||| || | | ||| |||
Sbjct 1518 CCTCAGGGATCCT-ATGGA-AATTCGTGATGCCTTGGCTTTCAGAGACGCAGGAGAACAA 1575
Query 1605 ACTGAAAGCATCTCCCTACACATATGTGAAATGACCTGTGCATTTTCGATGGCGACCGGT 1664
|||||| |||| | |||||||| ||||| ||||||||| || || |||| | || ||
Sbjct 1576 ACTGAATGCATGTGCCTACACACGTGTGAGTTGACCTGTGTGTTGTCCATGGAGGCCAGT 1635
Query 1665 GTTTTTAGCAGAATGTATAAACTTAGGTTTTTAAAGGTCTACAAGCATGTTA-ACGAGAG 1723
||| || || | ||| |||| || | |||| | ||||| ||||||||||| | | | ||
Sbjct 1636 GTTGTTGGCCGTATGCATAATCTCAAGTTTCTCAAGGTTTACAAGCATGT-AGATTACAG 1694
Query 1724 AGAATCGATGTTGCAGGTGATTCCTGAAGATGAATACCCTTCCATAAATTGTCT-C--CT 1780
||| |||| | |||| | ||||| || | | | || | || | | | || | ||
Sbjct 1695 AGAGTCGAAGCTGCAACTCATTCCAGACCAACAGTTCC-TGCC-TCG-TAGCCTACGGCT 1751
Query 1781 ACTCCATTGGGACGCATTTCCATTGAGCAAATTT-CCTCTCAGGTT-TAATACATATTGT 1838
| |||||||||| |||||||||||||| | | ||| || || | | || ||| || |
Sbjct 1752 ATTCCATTGGGATGCATTTCCATTGAG-AGCCCTGCCT-TCCGGCTCTGATCCATGTTTT 1809
Query 1839 CTTGTTGAACTCAATCTGCGTCACAGCAACCTAGAAACACTCTGGAGTGG-A-GTACTGA 1896
|||||||||||||||||||||||||| | ||||||| ||| ||| | | | || |||
Sbjct 1810 CTTGTTGAACTCAATCTGCGTCACAGTGATTTAGAAACTCTCAGGACTTGTATGT--TGA 1867
Query 1897 AGTTTGGTCATTTGAGGAAACTAGATGTGACGGGATCTAAGAATCTCAAACAACTTCCAG 1956
|| | | || || || |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1868 AGA--G-T--TT-GAAGAGACTAGATGTGACGGGATCTAAGTATCTCAAGCAACTTCCAG 1921
Query 1957 ATCTTTCATGTGCCGAGGAG-CTTGACGAGTTGCTTCTAGAACAATGCAAGAGACTAAAA 2015
|||||||| || | | ||| ||||| || |||||||| |||||||||| |||||| |
Sbjct 1922 ATCTTTCAAGTATC-ACGAGTCTTGAGGAATTGCTTCTGGAACAATGCACGAGACTGGAT 1980
Query 2016 GGAATTCCAGAGTCCATTGCAGAGAGGTCTACCCTAG-GCAGGCTTAATCTATCATAC 2072
|| |||||||||| |||| | | |||||||||||| | || ||||| ||||| |||
Sbjct 1981 GGCATTCCAGAGTGTATTGGAAAAAGGTCTACCCTAAAGAAG-CTTAAGCTATCCTAC 2037
Score = 165 bits (89), Expect = 2e-39
Identities = 149/177 (84%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 2790 AGCAGCCATGACTTTAAGAAACTGCCATCAAGCATCAGAGATCTTACCTCATTGGTAACT 2849
||||||||||| ||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 2659 AGCAGCCATGATTTTGAGACATTGCCACCAAGCATCAGAGATCTTACCTCATTGGTAACA 2718
Query 2850 CTCTGCCTGAATAACTGCAAGAAACTCAAATCACTGGAA-GAACTCCC-ACTGAGC-CTC 2906
|| ||||| |||||||||||||||||||||||| ||||| ||| |||| || | | |||
Sbjct 2719 CTTTGCCTTAATAACTGCAAGAAACTCAAATCAGTGGAAAGAA-TCCCCAC-GT-CTCTC 2775
Query 2907 CAGTTTCTCGACGCAAAGGGTTGTGATTCTCTTGAAGCTGAT-GATTTAGAACATTT 2962
|| ||||| || ||| | || |||||||| || ||||||| | | | ||||||||||
Sbjct 2776 CAATTTCTGGATGCACACGGCTGTGATTCCCTCGAAGCTGGTTG-TGTAGAACATTT 2831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117127503375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5