BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40140.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947766 jgi|Araly1|947766|scaffold_703995.1 2577 0.0
Ahg343386 jgi|Araly1|343386|fgenesh1_pg.C_scaffold_3003149 1293 0.0
> Ahg947766 jgi|Araly1|947766|scaffold_703995.1
Length=1687
Score = 2577 bits (1395), Expect = 0.0
Identities = 1569/1654 (95%), Gaps = 8/1654 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTCAACGACCAGTCATCAATCTCATGGTTCTTCACTCACAACACGACAAAAGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGGAGATTCAACGACCAGTTATCAATCTCATGGTTCTTCACTCACAACACGATAAAAGT 80
Query 61 GACAACCTTTCCCGACGAGAATCTCTCGCCGGTAAATCCAAATGGAGAACCTCCTTATCC 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 81 GACAACCTTTCCCGACGAGAATCTCTCGCCGGTAAATCCAAATGGAGAATCTCATTATCC 140
Query 121 CGTTCTTCTTCATCTTCTTCATCAAACAACAATTCTCCGACCAAAACAGAGATTCCGGCA 180
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 141 CGTTCTTCTTCATCTTCTTCATC--A-AACAATTCTCCGACCAAAACAGAGATTCCGGCA 197
Query 181 GAGTTTCTCTGTCCGATCTCAGGTTCTTTAATGGCTGACCCAATCATAGTCTCTTCCGGT 240
|||||||||||||||| |||||||||||||||| |||| |||||||| |||||||| |||
Sbjct 198 GAGTTTCTCTGTCCGACCTCAGGTTCTTTAATGTCTGATCCAATCATCGTCTCTTCTGGT 257
Query 241 CACTCCTACGAAAGAGCTTGCGTCATAGCTTGTAAAACCCTAGGCTTTACTCCAACCCCA 300
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 258 CACTCCTACGAAAGAGCTTGCGTCATAGCTTCTAAAACCCTAGGCTTTACACCAAATCCA 317
Query 301 CCTCCAGATTTCTCCACCGTGATACCAAATCTCGCTTTAAAATCCGCAATTCACAGCTGG 360
|| || |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 318 CCGCCGGATTTCTCCACCGTCATACCAAATCTCGCTTTAAAATCCGCAATTCTCAGTTGG 377
Query 361 TGTGAACGGCGGTGTTTTCCACCGCCGAAGCCACTCAACTCCGCCGCCGCGGAGAAGCTT 420
|||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 378 TGTGAACGACGGTGTTTTCCACCGCCAAAGCCACTCGATTCCGCCGCCGCGGAGAAGCTT 437
Query 421 ATACTCGCATTAATGGAGAAAAAACCACAAAGAAGAAAAGTATCTGTTTCAGAGAAAGAG 480
|||||| ||||||||||||||| ||||| | ||||||||| || ||||||||||| ||
Sbjct 438 ATACTCACATTAATGGAGAAAACACCAC--A-AAGAAAAGTCTCAGTTTCAGAGAAGGAA 494
Query 481 CTTATCCAAGCTATTAGAGATAAACCATCAGTGAGACTTAACCACGCCGCGACGGAGCTT 540
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 495 CTTATCAAAGCAATTAGAGATAAACCATCAGTGAGACTTAACCACGCTGCGACGGAGCTT 554
Query 541 GATCGGAGACCTAATTACTTCAACTCAAGCTCCGATGAGTCAATAGCTTCTTCAAGCCGT 600
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 555 GACCGGAGACCTAACTACTTCAATTCAAGCTCCGACGAGTCAATAGCTTCTTCAAGCCGT 614
Query 601 ACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATCGAA 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ACACTACAATTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATCGAA 674
Query 661 TCTTTAGAACCTAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAAAGTAAT 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 675 TCTTTAGAACCAAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAGAGTAAT 734
Query 721 CGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCATCACAAGAATCGATGAA 780
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 735 CGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCGTTACAAGAATCGATGAA 794
Query 781 AGTTCAAGAATCAGTTTATGTACAACGAGAGTAATCTCTGCACTTAAGTCACTGATTGTT 840
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 795 AGTTCAAGAATTAGTTTATGTACAACGAGACTAATCTCTGCACTTAAGTCACTGATTGTT 854
Query 841 TCCAGATACGCGACGGTTCAGGTGAATGTCACGGCGGTTCTTGTGAACTTGTCTTTGGAA 900
|| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 855 TCAAGATACGTGACGGTTCAGGTTAATGTCACGGCGGTTCTTGTGAATTTGTCTTTGGAG 914
Query 901 AAATCTAATAAAGTCAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTTTTG 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAATCTAATAAAGTTAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTTTTG 974
Query 961 AAATGCGGTTCCGTCGAAGCTCAGGAGCATTCCGCCGGAGTTATCTTCAGTTTAGCTCTT 1020
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 975 AAATGCGGTTCCGTTGAAGCGCAGGAACATTCCGCCGGAGTTATCTTCAGTTTAGCTCTT 1034
Query 1021 GAAGATGAGAACAAAACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCATTTG 1080
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GAAGATGAAAACAAGACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCATTTG 1094
Query 1081 ATCCGAGTTGGTACTGAGTTAACTCGGCATGACTCGGCTTTAGCTTTGTATCATCTTTCT 1140
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1095 ATCCGAGTTGGTACTGAGTTGACTCGTCATGACTCGGCTTTAGCTTTGTATCATCTTTCG 1154
Query 1141 CTTGTACAGAGTAATAGAGGGAAGCTAGTTAAGCTTGGAGCTGTTCAAATGCTTTTGGGT 1200
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1155 CTTGTACAGAGTAATAGAGGGAAGCTTGTTAAGCTTGGAGCTGTTCAGATGCTTTTGAAC 1214
Query 1201 ATGGTGA-GTTTAGGACAGATGATTGGTCGTGTTTTGTTGATTCTTTGTAATATGGCTTC 1259
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1215 ATGGTGAAGTT-AGGACAGATGATTGGTCGTGTTTTGTTGATTCTTTGTAACATGGCTTC 1273
Query 1260 GTGTCCGGTGAGTCGACCAGCTTTGCTTGACTCGGGTGGTGTTGAATGTATGGTTGGGGT 1319
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1274 GTGTCCGGTGAGTAGACCAGCTTTGCTTGACTCAGGTGGTGTTGAATGTATGGTTGGGGT 1333
Query 1320 TTTGAGAAGAGATAGAGAGGTTAATGAGTCGACTCGGGAGAGCTGTGTTGCGGTTTTGTA 1379
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1334 TTTGAGAGGAGATAGAGAGGTTAATGAGTCGACTCGGGAGAGTTGTGTTGCGGTTTTGTA 1393
Query 1380 TGGGTTGAGTCACGACGGTGGTTTGAGGTTTAAAGGGTTGGCTATGGCGGCGAATGCGGT 1439
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1394 TGGGTTGAGTCACGACGGTGGTTTGAGGTTTAAGGGGTTGGCTATGGCGGCGAATGCGGT 1453
Query 1440 GGAGGAGTTGGTGAAAGTGGAGAGGAGTGGGAGAGAAAGAGCTAAGCAGAAGGCGAGAAG 1499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1454 GGAGGAGTTGGTGAAAGTGGAGAGGAGTGGAAGAGAAAGAGCTAAGCAGAAGGCGAGAAG 1513
Query 1500 AGTTTTGGAAGTGTTGAGAGCTAAAATTGAAGATGATGATTTGGTGGAGAATGAGGAGAT 1559
||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1514 AGTTTTGGAAGTGTTGAGAGCTAAAATGGAAGATGATGATTCGCCGGAGAATGAGGAGAT 1573
Query 1560 TGATTGGGAGGAGTTGCTTAATTCCGGTGATGTTAGTCGGAGCCGGTGTCGACTCGGTGG 1619
||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1574 TGATTGGGAAGTGTTGCTTAATTCAGGTGATGTTAGTCGGAGCCGGTATCGACTCGGTGG 1633
Query 1620 TGAGAAATCTTGTGTTAACTCGGCCGAGTTTTGA 1653
||||||||| ||||||||||||||||||||||||
Sbjct 1634 TGAGAAATCGTGTGTTAACTCGGCCGAGTTTTGA 1667
> Ahg343386 jgi|Araly1|343386|fgenesh1_pg.C_scaffold_3003149
Length=903
Score = 1293 bits (700), Expect = 0.0
Identities = 798/846 (94%), Gaps = 3/846 (0%)
Strand=Plus/Plus
Query 358 TGGTGTGAACGGCGGTGTTTTCCACCGCCGAAGCCACTCAACTCCGCCGCCGCGGAGAAG 417
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 25 TGGTGTGAACGACGGTGTTTTCCACCGCCGAAGCCACTCGATTCCGCCGCCGAGGAGAAG 84
Query 418 CTTATACTCGCATTAATGGAGAAAAAACCACAAAGAAGAAAAGTATCTGTTTCAGAGAAA 477
||||||||| ||||||| ||||||| |||||||||||| ||| |||||||||||||||
Sbjct 85 CTTATACTCACATTAATTGAGAAAACACCACAAAGAAG---AGTCTCTGTTTCAGAGAAA 141
Query 478 GAGCTTATCCAAGCTATTAGAGATAAACCATCAGTGAGACTTAACCACGCCGCGACGGAG 537
||||||||| |||| || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 142 GAGCTTATCAAAGCAATCAAAGATAAACCATCAGTGAGACTTAACCACGCTGCGACGGAG 201
Query 538 CTTGATCGGAGACCTAATTACTTCAACTCAAGCTCCGATGAGTCAATAGCTTCTTCAAGC 597
||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 202 CTTGACCGGAGACCTAACTACTTCAATTCAAGCTCCGACGAGTCAATAGCTTCTTCAAGC 261
Query 598 CGTACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATC 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TGTACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATC 321
Query 658 GAATCTTTAGAACCTAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAAAGT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 322 GAATCTTTAGAACCAAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTTAAGAGT 381
Query 718 AATCGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCATCACAAGAATCGAT 777
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 382 AATCGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCGTTACAAGAATCGAC 441
Query 778 GAAAGTTCAAGAATCAGTTTATGTACAACGAGAGTAATCTCTGCACTTAAGTCACTGATT 837
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 442 GAAGGTTCAAAAATCAGTTTATGTACAACGAGACTAATCTCTGCACTTAAGTCACTGATT 501
Query 838 GTTTCCAGATACGCGACGGTTCAGGTGAATGTCACGGCGGTTCTTGTGAACTTGTCTTTG 897
||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 502 GTTTCGAGATACGCGACGGTTCAGGTCAATGTCACGGTGGTTCTTGTCAACTTGTCTTTG 561
Query 898 GAAAAATCTAATAAAGTCAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTT 957
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 562 GAAAAATCTAATAAAGTTAAGATCGTACGGTCAGGAATCGTTCCACCGTTGATCGACGTT 621
Query 958 TTGAAATGCGGTTCCGTCGAAGCTCAGGAGCATTCCGCCGGAGTTATCTTCAGTTTAGCT 1017
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 TTGAAATGCGGTTCTGTTGAAGCTCAGGAACATTCCGCCGGAGTTATCTTCAGTTTAGCT 681
Query 1018 CTTGAAGATGAGAACAAAACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCAT 1077
||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||||
Sbjct 682 CTTGAAGATGAGAACAAGATGGCGATTGGTGTTCTCGGAGGTTTAGAGTCGTCGCTTCAT 741
Query 1078 TTGATCCGAGTTGGTACTGAGTTAACTCGGCATGACTCGGCTTTAGCTTTGTATCATCTT 1137
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 742 TTGATCCGAGTTGGTACTGAGTTGACTCGGCATGACTCAGCTTTAGCTTTGTATCATCTC 801
Query 1138 TCTCTTGTACAGAGTAATAGAGGGAAGCTAGTTAAGCTTGGAGCTGTTCAAATGCTTTTG 1197
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 802 TCTCTTGTACAGAGTAATAGAGGGAAGCTTGTTAAGCTTGGAGCTGTTCAGATGCTTTTG 861
Query 1198 GGTATG 1203
||||||
Sbjct 862 GGTATG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5