BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40150.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947764 jgi|Araly1|947764|scaffold_703993.1 1554 0.0
Ahg484603 jgi|Araly1|484603|fgenesh2_kg.5__595__AT3G28200.1 549 2e-155
Ahg932567 jgi|Araly1|932567|scaffold_400555.1 372 5e-102
> Ahg947764 jgi|Araly1|947764|scaffold_703993.1
Length=1027
Score = 1554 bits (841), Expect = 0.0
Identities = 956/1012 (94%), Gaps = 5/1012 (0%)
Strand=Plus/Plus
Query 287 GTTCTGAATCTCCCTTCAACAATGGCGGAACAATCTCAACTCAAGAATCTCACCATCATC 346
||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 1 GTTCTCAATCT-CCTTCAACAATGGCGGAACAATCTCAACTCCATAATCTCACCATCA-C 58
Query 347 C-TCCTCCTCCTCTGCTTATCCTTCCAATCACTATCCTTCGCCGCCGAATCTCACCTAAC 405
| || || |||||||||| ||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 59 CATCATCATCCTCTGCTTCTCCTTCCAATCACTATCCTCCGCCGCTGAATCTCACCTCAC 118
Query 406 CGTCGATTTCTACTCCAAATCATGCCCTAAATTCCTCGACATTATCCGCGAAACCATCAC 465
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 119 CGTCGATTTCTACTCCAAATCTTGCCCTAATTTCCTCGACATTATTCGCGAAACCATCAC 178
Query 466 CAACAAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGA 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAACAAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGA 238
Query 526 CTGTTTCCCCAACGGCTGCGACGCCTCCGTCCTCGTTTCTTCCACCGCTTTCAACACCGC 585
||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 239 CTGCTTCCCTAACGGCTGCGACGCCTCCGTCCTCGTTTCCTCAACCGCTTTCAACACCGC 298
Query 586 CGAACGCGATTCATCAATCAATCTCTCTCTCCCCGGAGACGGATTCGACGTAGTAATCCG 645
||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 299 AGAACGCGATTCATCAATCAATCTCTCTCTTCCGGGCGACGGATTCGACGTCGTAATCCG 358
Query 646 AGCTAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGC 705
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTAAAACAGCTCTAGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGC 418
Query 706 CGTCGCGGTACGTGATCTCCTCGTAACCGTCGGTGGACCTTACTACGAAATCTCCCTCGG 765
|| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 419 CGCCGCGGTACGTGATCTACTCGTCACCGTCGGTGGTCCTTACTACGAAATCTCCCTCGG 478
Query 766 CCGTCGCGATTCACGAA-CTTCGAAATCATCTCTCGTCTCCGATCTCCTCCCGCTCCCGT 824
|||||||||||| || || ||||||| ||||||||||||||||||||||| || ||||
Sbjct 479 CCGTCGCGATTCTCGTGTCT-CGAAATCGTCTCTCGTCTCCGATCTCCTCCCACTTCCGT 537
Query 825 CGATGCAGATATCGAAGCTCATCGATCAATTCAGCTCCAGAGGCTTCTCCGTTCAAGAAA 884
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGATGCAGATCTCGAAGCTCATCGATCAATTCAGCTCCAGAGGCTTCTCCGTTCAAGAAA 597
Query 885 TGGTTGCTTTGAGTGGTGCTCACACCATCGGATTCTCACATTGCAAGGAGTTCACGAACC 944
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 598 TGGTTGCTTTGAGCGGTGCTCACACCATCGGATTCTCACATTGCAAAGAGTTCACTAACC 657
Query 945 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTAGCTTTAAAGAAAG 1004
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 658 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAAG 717
Query 1005 CTTGTTCGAATTCCAAAAATGACCCTACGATATCTGTCTTCAACGACGTTATGACTCCGA 1064
|||||| ||||| || ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 718 CTTGTTTGAATTACAGAAATGACCCTACGATCTCTGTCTTCAACGACGTGATGACTCCAA 777
Query 1065 ACAAATTCGATAATATGTATTTCCAGAATATTCCGAAAGGTCTCGGGTTACTTGAATCGG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACAAATTCGATAATATGTATTTCCAGAATATTCCGAAAGGTCTCGGGTTACTTGAATCGG 837
Query 1125 ATCACGGTTTATTCTCCGACCCGAGAACCCGTCCGTTCGTTGAGTTATACGCGAGAGACC 1184
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 ATCACGGGTTATTCTCCGACCCGAGAACCCGTCCGTTTGTTGAGTTATACGCGAGAGACC 897
Query 1185 AATCTCGGTTCTTTAACGACTTTGCCGGAGCTATGCAGAAGTTGAGTCTTCACGGTGTTT 1244
|| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGCTCGATTCTTTAAAGACTTCGCCGGAGCTATGCAGAAGTTGAGTCTTCACGGTGTTT 957
Query 1245 TGACCGGACGGCGAGGAGAGATCCGACGAAGGTGTGATGCGATCAACTAAAA 1296
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 TGACCGGACGGCGAGGAGAGATCCGACGAAGGTGTGATGCTATCAACTAAAA 1009
> Ahg484603 jgi|Araly1|484603|fgenesh2_kg.5__595__AT3G28200.1
Length=1039
Score = 549 bits (297), Expect = 2e-155
Identities = 699/890 (79%), Gaps = 39/890 (4%)
Strand=Plus/Plus
Query 413 TTCTACTCCAAA-TCATGCCCTAA-ATTCCTCGACATTA-TCCGCGAAACCATCACCAAC 469
||||||| |||| ||||||| || ||||||||||| || |||| || || ||||| |||
Sbjct 85 TTCTACT-CAAAGACATGCCC-AAGATTCCTCGACA-TAGTCCGTGACACAATCACAAAC 141
Query 470 AAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGT 529
||||| ||| ||| |||||| ||||| ||||| | | |||| |||||||||||||| |||
Sbjct 142 AAACAAATCACAAATCCAACCACCGCAGCCGCCGTTATCCGTCTCTTCTTCCACGATTGT 201
Query 530 TTCCCCAACGGCTGCGACGCCTCCGTCCTCGTTTCTTCCACCGCTTTCAACACCGCCGAA 589
||||| ||||| |||||||||||||||||| | || |||||||| ||||||||||| |||
Sbjct 202 TTCCCTAACGGTTGCGACGCCTCCGTCCTCCTCTCCTCCACCGCCTTCAACACCGCAGAA 261
Query 590 CGCGATTCATCAATCAATCTCTCTCTCCCCGGAGACGGATTCGACGT-AGTAATCCGAGC 648
|| || || || ||||| ||||| ||||||||||| || |||||||| | | |||||||
Sbjct 262 CGTGACTCCTCCATCAACCTCTCACTCCCCGGAGATGGCTTCGACGTCA-TTGTCCGAGC 320
Query 649 TAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGCCGT 708
||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | ||
Sbjct 321 CAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTCTTGTTCCGACATAATCTCTGT 380
Query 709 CGCGGTACGTGATCTCCTCG-TAACCGTCGGTGGACCTTACTACGAAATCTCCCTCGGCC 767
||| ||||||||| | | | ||||||||||| ||||||||||| | | ||||||||
Sbjct 381 CGCAACACGTGATCTTTT-GATCACCGTCGGTGGTCCTTACTACGACGTTTTCCTCGGCC 439
Query 768 GTCGCGATTCACGAACTTCGAAATCATCTCTCGTCTCCGATCTCCTCCCGCTCCCGTCGA 827
|||| |||||| ||||||| ||||| ||||| | ||||||| || || || || || |
Sbjct 440 GTCGTGATTCAAGAACTTCTAAATCTTCTCTTTTAACCGATCTTCTTCCTCTTCCTTCTA 499
Query 828 TGC-AGATATCGAAGCTCAT-CGATCAATTC-AGCTCCAGAGGCTTCTCCGTTCAAGAAA 884
| | || || || |||| | | || || | || | ||| ||| ||||||||||
Sbjct 500 CACCA-ATCTCTAAAATCATTCAA-CAGTTTGAA-TCAAAAGGTTTCAATGTTCAAGAAA 556
Query 885 TGGTTGCT-TTGAGTGGTGCTCACACCATCGGATTCTCACATTGCAAGGAGTTCACGAAC 943
|||||||| || ||||| || || | || || || |||||||| || ||||| |
Sbjct 557 TGGTTGCTCTT-AGTGGAGCACATTCTATAGGGTTTTCACATTGTAAAGAGTTTGTGGGT 615
Query 944 CGGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTAGCTTTAAAGAAA 1003
| ||| | |||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 616 CAGGTGGGTCGGAATAATA---CCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAA 672
Query 1004 GCTTGTTCGAATT-CCAAAAATGACCCTACGATATCTGTCTTCAACGACGTTATGACTCC 1062
|||||| | |||| || ||| || || || || ||||| || || || ||||||||||
Sbjct 673 GCTTGTGCTAATTACCCTAAA-GATCCGACTATTTCTGTGTTTAATGATATTATGACTCC 731
Query 1063 GAACAAATTCGATAATATGTATT-TCCAGAATATTCCGAAAGG-TCTCGGGTTACTTGAA 1120
|| || || ||||||||||||| || ||||| || ||||| ||| ||||||||||||
Sbjct 732 TAATAAGTTTGATAATATGTATTATC-AGAATCTTAA-AAAGGGTCTTGGGTTACTTGAA 789
Query 1121 TCGGATCACGG-TT-TATTCTCCGACCCGAGAACCCGTCCGTTCGTTGAG-TTATACGCG 1177
|||||||| || || |||||| |||||||||||| | | || ||||| || || ||
Sbjct 790 TCGGATCATGGGTTATATTCT--GACCCGAGAACCAGAACTTTTGTTGATCTT-TATGCT 846
Query 1178 AGAGAC-CAATCTCGGTTCTTT-AACGACTTTGCCGGAGCTATGCAGAAGTTGAGTCTTC 1235
| ||| ||| || ||| ||| || || ||||| |||||||||||||||||||||||
Sbjct 847 A-AGAATCAAGATCTGTT-TTTCAAAGATTTTGCTAGAGCTATGCAGAAGTTGAGTCTTT 904
Query 1236 ACGGTGTTTTGACCGG-ACGGCGAGGAGAGATCCGACGAAGGTGTGATGC 1284
| ||| | ||| || | | |||||||||||||| |||||||||||||
Sbjct 905 ATGGTATAAAGACTGGTA-GAAGAGGAGAGATCCGAAGAAGGTGTGATGC 953
> Ahg932567 jgi|Araly1|932567|scaffold_400555.1
Length=627
Score = 372 bits (201), Expect = 5e-102
Identities = 229/243 (94%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 495 CCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCCAACGGCTGCGACGCCTCCG 554
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 239 CCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGATGCCTCCG 298
Query 555 TCCTCGTTTCTTCCACCGCTTTCAACACCGCCGAACGCGATTCATCAATCAATCTCTCTC 614
|||||||||| || ||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 299 TCCTCGTTTCCTCAACCACTTTCAACACCGCCGAACGCGATTCATCAATCAACCTCTTTC 358
Query 615 TCCCCGGAGACGGATTCGACGTAGTAATCCGAGCTAAAACAGCTCTCGAACTCGCTTGTC 674
||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 359 TCCCCGGCGACGGATTCGACGTCGTGATCCGCGCTAAAACAGCTCTAGAACTCGCTTGTC 418
Query 675 CCAACACAGTCTCTTGCTCCGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTAACCG 734
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CCAACACAGTCTCTTGCTCTGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTCACCG 478
Query 735 TCG 737
|||
Sbjct 479 TCG 481
Score = 309 bits (167), Expect = 4e-83
Identities = 194/207 (94%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 296 CTC-CCTTCAACAATGGCGGAACAATCTCAACTCAAGAATCTCACCATCATCCTCCTCCT 354
||| ||||||||||||||||| |||||||||||||| ||||||||||||| | || || |
Sbjct 9 CTCTCCTTCAACAATGGCGGACCAATCTCAACTCAATAATCTCACCATCAACATCATCAT 68
Query 355 CCTCTGCTTATCCTTCCAATCACTATCCTTCGCCGCCGAATCTCACCTAACCGTCGATTT 414
||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 69 CCTCTGCTTCTCCTTCCAATCACTATCCTCCGCCGCCGAATCTCACCTCACCGTCGATTT 128
Query 415 CTACTCCAAATCATGCCCTAAATTCCTCGACATTATCCGCGAAACCATCACCAACAAACA 474
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CTACTCCAAATCTTGCCTTAAATTCCTCGACATTATCCGCGAAACCATCACCAACAAACA 188
Query 475 GATCTCAACTCCAACAACCGCCGCCGC 501
||||||||||||||| |||||||||||
Sbjct 189 GATCTCAACTCCAACGACCGCCGCCGC 215
Score = 169 bits (91), Expect = 7e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 984 TCGCGGTAGCTTTAAAGAAAGCTTGTTCGAATTCCAAAAATGACCCTACGATATCTGTCT 1043
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 479 TCGCGGTAGCTTTAAAGAAAGCTTGTTCGAATTACAAAAATGACCCTACGATCTCTGTCT 538
Query 1044 TCAACGACGTTATGACTCCGAACAAATTCGATAATATGTATTTCCA 1089
| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 539 TTAACGACGTTATGACTCCAAACAAATTCGATAATATGTATCTCCA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5