BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40155.1

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947763 jgi|Araly1|947763|scaffold_703992.1                        235    2e-61


> Ahg947763 jgi|Araly1|947763|scaffold_703992.1
Length=241

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 172/192 (90%), Gaps = 10/192 (5%)
 Strand=Plus/Plus

Query  142  GACCTAAATCTGTCGAT---GCAGATTGCAAACACCCGGTT-G---G-AC-C-GTACACG  191
            |||| ||||| ||||||   |||||||||||||| | |||| |   | || | |||||||
Sbjct  42   GACCAAAATCAGTCGATGCAGCAGATTGCAAACATCTGGTTGGACCGTACACGGTACACG  101

Query  192  GACTCATGCTTTACGGATTGCGTATCTGGAAAATATGGATATAATTATGAATCCGCTTTT  251
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  102  GACTCATGCTTTACGGATTGCGTGTCTGGAAAATATGGATATAATTACGAATCCGCTTTT  161

Query  252  TGTAGCCGTGACGAGACCGGAACTTGTAAAATATGTTGCTGCGAACTTATCAACGAATAG  311
            ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  162  TGTAGACGTGACGAGACCGGAACTTGTAAAATATGTTGCTGCGAAATGATCAACGAATAG  221

Query  312  GTGCATATGCAT  323
            |||||| |||||
Sbjct  222  GTGCATGTGCAT  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18696238610


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5