BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40170.1
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493970 jgi|Araly1|493970|fgenesh2_kg.7__3403__AT5G40170.1 3986 0.0
> Ahg493970 jgi|Araly1|493970|fgenesh2_kg.7__3403__AT5G40170.1
Length=2487
Score = 3986 bits (2158), Expect = 0.0
Identities = 2379/2488 (96%), Gaps = 5/2488 (0%)
Strand=Plus/Plus
Query 1 CTTCATATCTTCATATCATGAAATCGAATTTGGCCGTTTTCTTCATAACTTGTTTCTTCT 60
|||||||||||||||| |||| |||| |||||||||||||||| || |||| ||||||||
Sbjct 1 CTTCATATCTTCATATGATGAGATCGCATTTGGCCGTTTTCTTGATCACTTCTTTCTTCT 60
Query 61 GTTGCGTCTTTGTGACCAGCGATTCAGTTTACACTCTACCATTTCCTTTCCCACGCGATC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 61 GTTGCGTCTTTGTGACCAGCGACTCAGTTTACACTCTACCATTTCCTTTCCCTCGCGACC 120
Query 121 AAGTTGAGATTCTGTTGGAATTGAAGAATGAGTTTCCATCCTTCAACTGCGACCTCACTT 180
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTTGAGATTCTCTTGGATTTGAAGAATGAGTTTCCATCCTTCAACTGCGACCTCACTT 180
Query 181 GGAAACTCGATTACTTTGGTCGAATGGACACTAGAGCAAATATAAGCTCCTGGACCAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAACTCGATTACTTTGGTCGAATGGACACTAGAGCAAATATAAGCTCCTGGACCAAAG 240
Query 241 ACTCTGACTCCTTTAGTGGGGTTTCCTTTGATAGCGAGACCGGTGTGGTGAAGGAGCTGT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCTAACTCCTTTAGTGGGGTTTCCTTTGATAGCGAGACCGGTGTGGTGAAGGAGCTGT 300
Query 301 CCCTTGGTCGTCAATGTCTTACTAGTCTCAAGGCTAATAGTAGCCTCTTCAGATTCCAAC 360
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CCCTTGGTCGTCAATGTCTCACTAGTCTCATGGCTAATAGTAGCCTCTTCAGATTCCAAC 360
Query 361 ACCTCAGGTACCTCGATCTCTCTGAAAATCATTTTGACTCGTCCCCTATACCCTCTGGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ACCTCAGGTACCTCGATCTCTCTGAAAATCATTTTGACTCGTCCCCTATCCCCTCTGGAT 420
Query 421 TTGGTAGACTGACCTACTTGGAATCCTTGGATCTTAGCAAAAATGGGTTTATAGGAGAAG 480
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TTGGCAGACTCACCTACTTGGAATCCTTGGATCTTAGCAAAAATGGGTTTATCGGAGAAG 480
Query 481 TTCCATCCTCAATAAGTAACCTAAGCCGGTTAACCAATTTAGACCTTTCATATAACAAGC 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TTCCATCCTCAATAAGTAACCTAAGCCGGTTAACTAATTTAGACCTTTCATATAACAAGC 540
Query 541 TCACCGGTGGTATTCCCAATCTACATAGTTTAACCCTTCTTGAGAATATAGACCTATCAT 600
|||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 541 TCACCGGTCGTATTCCCAGTCTACATAATTTAACCCTTCTTGAAAATATAGACCTATCAT 600
Query 601 ATAATAAGTTTTCTGGAGCCATTCCTTCTTACCTCTTCACCATGCCTTTTCTAGTTTCTC 660
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 601 ATAATAAGTTTTCTGGACCCATTCCTGCTTACCTCTTCACCATGCCTTTCCTAGTTTCTC 660
Query 661 TTAACCTACGCCAAAACCATCTTAGTGACCCTCTTGAGAATATAAATTATTCTGCAACCT 720
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 661 TTAACCTACGCCAAAACCATCTTAGTGACCCTCTTGAAAATATAAATCCTTCTGCAACCT 720
Query 721 CTAAACTTTTAATTTTAGACATGGCTTATAACCTTATGAGTCATCGAATCCTAGAACCTA 780
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 CTAAGCTTTTAATTTTAGACATGGCCTATAACCTTATGAGTCATCGAATCCTAGAACCTA 780
Query 781 TCTCAAAATTAGCCAACCTCATACAAATTGACTTATCTTTTCAGAAGACACCCTACACAT 840
|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 781 TCTCAAAATTAGCCAACCTCATGCGTATTGACTTATCTTTTCAAAAGACACCCTACACAT 840
Query 841 TCAACTTTGATTTCTTGCTCTTCAAGTCTCTAGTGCGTTTGGATCTTTCCGGAAATAGTG 900
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 TCAACTTCGATTTCTTGCTCTTCAAGTCTCTAGAGCGTTTGGATCTTTCCGGAAATAGTG 900
Query 901 TTTCAGTGGTTGGTACCGGTTCAGAAAATTTGACACATCTAGACTTGTCGAGCTGCAACA 960
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 901 TGTCAGTGGTTGGTACCGGTTCGGAAAATTTGACACATCTAGAGTTGTCGAGCTGTAACA 960
Query 961 TCACCGAGTTCCCGATGTTTATTAAGGACTTACAAAGATTATGGTGGTTAGACATTTCCA 1020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTACCGAGTTCCCGATGTTTATTAAGGACTTACAAAGATTATGGTGGTTAGACATTTCCA 1020
Query 1021 ATAATAGAATTAAAGGAAAAGTGCCTGAGTTGTTATGGACTCTGCCTTCTATGCTCCATG 1080
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 ATAATAGAATTAAAGGAAAAGTGCCTGAGTTGTTATGGAATCTGCCTTCTATGCTCCATG 1080
Query 1081 TAAATCTCTCACGCAACTCCTTTGATTCCTTGGAAGGTACGCCAAAAATAATCCTCAATT 1140
|||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| ||||
Sbjct 1081 TAAATCTCTCACACAACTCCATCGATTCCTTAGAAGGTACGCCAAAAGTAATCCTTAATT 1140
Query 1141 CGTCGATTTCGGAGTTAGATTTGAGTTCAAATGCCTTCAAAGGATCTTTTCCTATTATTC 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 CGTCGATTTCGGAGTTAGATTTGAGTTCAAATGCCTTTAAAGGATCTTTTCCTATTATTC 1200
Query 1201 CACCTTATGTCAACATCATGGCTGCATCAAATAACTATTTCACTGGAGGCATACCACTTA 1260
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 CACCTTATGTCCACATCATGGCTGCATCAAATAATTATTTCACTGGAGGCATACCACTTA 1260
Query 1261 TATTCTGCAAAAGATATCGACTCAGTCTCCTTGATCTATCAAACAACAACTTCAGTGGGA 1320
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 TATTCTGCAAAAGATTTCGACTGAGTCTCCTTGATCTATCAAACAACAACTTCAGTGGGT 1320
Query 1321 CAATTCCGAGATGCTTGACAAATGTGTCACTCGGACTAGAAGCGTTGAAACTCAGTAACA 1380
||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1321 CAATTCCCAGATGTTTGACAAATGTATCACTAGGACTAGAAGCGTTGAAACTCAGTAACA 1380
Query 1381 ACAGCCTCACTGGGAGACTTCCGGACATAGAAGACCGCTTAGTACTACTTGACGTTGGCC 1440
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 ACAACCTTACTGGGAGACTTCCGGACATAGAAGATCGCTTAGTACTACTTGACGTTGGCC 1440
Query 1441 ACAACCAAATAAGTGGGAAGCTTCCAAGGTCTCTAGTAAACTGCACAACCCTAAAGTTTC 1500
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1441 ACAACCAAATAAGTGGGAAGCTTCCAAGGTCTCTAGTAAATTGCACAAGCCTAAAGTTTC 1500
Query 1501 TAAATGTGGAAGGAAACCACATCAACGACACTTTCCCTTTCTGGCTGAAGGCTTTGACGC 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 TAAATGTGGAAGGAAACCACATCAACGACACTTTCCCTTTCTGGCTGAAGGCTTTGACAC 1560
Query 1561 GTCTTGAAATCATTGTTCTGAGATCAAACAGATTCCACGGTCCCATTTCTTCTCCTGAGG 1620
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1561 GTCTTGAAATCATTGTTCTGAGATCAAACAGATTTCATGGTCCCATTTCTTCTCCTGAGA 1620
Query 1621 TCTCTCTTTCATTTACGGCACTGCGGATAATTGATATTTCCCGTAACAGCTTCAACGGGA 1680
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1621 TCTCTCTTTCATTTACCGCACTGCGGATAATTGATATATCCCGTAACAGTTTCAATGGAA 1680
Query 1681 GCCTACCGCAAAACTACTTTGCGAATTGGAGTGCACCTTTGGTTAATACCCCACAAGGAT 1740
|||| || |||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1681 GCCTGCCACAAAGTTACTTTGCGAATTGGAGTGCACCTTTGGTTAATATCCCACAAGGCT 1740
Query 1741 ATCGTTGGCCAGAGTACACAGGAGATGAACACTCTAAATATGAGACCCCGCTTTGGTCTT 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ATCGTTGGCCAGAGTACACAGGAGATGAACACTCTAAATATGAGACCCCGCTTTGGTCTT 1800
Query 1801 ATCCTTCCATTCATTTGAGAATAAAAGGACGAAGCATAGAGTTGGGAAAGATTCCAGATA 1860
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1801 ATCCTTCCATTCATTTGAGAATCAAAGGACGAAGCATAGAGTTGGGAAAGATCCCAGACA 1860
Query 1861 CATACACGTCGATAGATTTCTCAGGAAATAGTTTTGAAGGACAGATTCCAGAATCAATAG 1920
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1861 CATACACATCAATAGATTTCTCAGGAAATAGCTTTGAAGGACAGATTCCAGAATCAATAG 1920
Query 1921 GTGAT-TTGAAATCGTTGATTGTTCTGGACTTATCTAACAACTCTTTCACTGGTCGTATT 1979
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GTT-TCTTGAAATCGTTGATTGTTCTGGACTTATCTAACAACTCTTTCACTGGTCGTATT 1979
Query 1980 CCATCGTCGTTGGCCAAACTTAAACAACTCGAGTCATTGGATCTATCTCAAAACCGAATC 2039
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1980 CCATCGTCTTTGGCCAAGCTTAAACAACTCGAATCATTGGATCTATCTCAAAACCGAATC 2039
Query 2040 TCTGGAAATATACCTCAAGAGCTAAGAGAGCTGACGTTTTTGGGATATGTTAACATGTCA 2099
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2040 TCTGGAAATATACCTCAAGAGCTAAGAGACCTCACGTTTTTGGGATATGTTAACATGTCA 2099
Query 2100 CATAACAGACTCACCGGCCAAATACCACAGAGTACACAGGTTGGAGGGCAACCTAAATCC 2159
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2100 CATAACAGACTCACCGGCCAAATACCACAGAGTACACAGATTGGAGGGCAACCTAAATCC 2159
Query 2160 TCCTTTGAAGGGAATATCAATCTTTGTGGTCTTCCTCTTCAAGAGAGTTGTTTAAGGGGA 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2160 TCCTTTGAAGGGAATATCAATCTTTGTGGTCTTCCTCTTCAAGAGAGTTGTTTTAGGGGA 2219
Query 2220 AATGGAGTACCATCAACACCACATACACAAGAGCAAGAACTACCAAAGCAAGAACATGCG 2279
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2220 AATGGAGCACCATCAACACCACAGACACAAGAGCAAGAACTACCAAAGCAAGAACACGCG 2279
Query 2280 TTGAACTGGAAAGCAGCTGCGATAGGCTATGGACCCGGAGTGTTGTTTGGACTGGCGATC 2339
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2280 TTGAACTGGAAAGCAGCTGCAATAGGCTATGGACCCGGAGTGTTGTTTGGACTGGCGATC 2339
Query 2340 GGACAAGCCTTTGCTCGATACAAACCGGTCTTGTTCTATAAGTTGTTTCGACTTTGAGAT 2399
||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 2340 GGACAAGCCCTTGCTCGATACACACCGGTCTTGTTCTATAAGTTGTTTCGCCTTTGAGAT 2399
Query 2400 GTATTGTTTCTTCTTCTTCAT--TTT-GGTGTTGAATCATATGTAAAATAATCAGTTTAC 2456
||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 2400 GTATTGTTTCTTCTTCTTCTTCGTTTTGGTGTTGAATCATATGTAAAATAATCAGTTTCC 2459
Query 2457 TACTCTTTGCTTTTTGGGCTTTGACGAT 2484
|||||||||||||| ||||||| |||||
Sbjct 2460 TACTCTTTGCTTTTCGGGCTTTAACGAT 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93625822210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5