BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40190.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947758 jgi|Araly1|947758|scaffold_703987.1 924 0.0
Ahg484599 jgi|Araly1|484599|fgenesh2_kg.5__591__AT3G28140.1 531 4e-150
> Ahg947758 jgi|Araly1|947758|scaffold_703987.1
Length=594
Score = 924 bits (500), Expect = 0.0
Identities = 564/595 (95%), Gaps = 4/595 (1%)
Strand=Plus/Plus
Query 82 ATTCCGACTTGGAA-TA-AAATGTCAGAAGGCTACGCAATCGAGCTATACTTCGATCCAG 139
||||||||||| || | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 2 ATTCCGACTTGAAACCACAGATGTCAGAAGGCTACGCAATCGAGCTTTACTTCGATCCAG 61
Query 140 CACTCGAAAACCAAGTATTGAAAGCATGGAACGTCTTCGCTCGCCGTCAAATCAGTACCA 199
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 62 CACTCGAAAACCAAGTTTTGAAAGCATGGAACGCCTTCGCTCGCCGTCAAATCAGTACCA 121
Query 200 AATTGATCAACACTGAGTCTCGTCCACACATAACACTCTTCTCCACCTCCTTCTTCGATT 259
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 122 AATTGATCAACACTGAGTCTCGTCCACATATAACACTCTTCTCTACCTCTTTCTTCGATT 181
Query 260 CAACGAGACTCGAATCCGTCATCAAAAACTTCGTATCCAAGCAAGAACCAATCTCGATCT 319
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 182 CAACGAGACTCGAATCCGTCATCAAAAACTTCGTATCGAAGCAAGAACCAATCTCGATCT 241
Query 320 CGTTCTCTACTATCGGTAGCTTCTCTAGCGACAACAACGTACTGTTTCTATCTCCGACTC 379
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 CGTTCTCCACTATCGGCACCTTCTCTAGCGACAACAACGTACTGTTTCTATCTCCGACAC 301
Query 380 CGTCTCTATCGCTTCTTCAGTTGCAGACTCAGTTATGTGATATGTTGAAGAAAGAATCTG 439
||||||| |||||||||||||| ||| ||||||||||||| | | |||||||||||||||
Sbjct 302 CGTCTCTCTCGCTTCTTCAGTTACAGTCTCAGTTATGTGACACGATGAAGAAAGAATCTG 361
Query 440 TTGACATTGGTGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCCGTGGCTCTTG 499
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 362 TTGAGATTGGTGAAGATTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCTGTGGCTCTTG 421
Query 500 ATGTTCCTAAGTCTCGTATGGCTGAGGCTTTCTCTGTGTTGAGAGATTTGAAGCTTCCGG 559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATGTTCCTAAGTCACGTATGGCTGAGGCTTTCTCTGTGTTGAGAGATTTGAAGCTTCCGG 481
Query 560 TGAATGGTTATGGTATGGAGATTGGTCTCGTTGAGTTTTCTCCTGTTCGTGAAGTCTTCT 619
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 482 TGAATGGTTATGGTATGGAGATTGGTCTTGTTGAGTTTTCTCCGGTTCGTGAAGTCTTCT 541
Query 620 CATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTTGTTGTTGGTTTTTATGT 674
||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 542 CATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTAGT-GTTGGTTTT-ATGT 594
> Ahg484599 jgi|Araly1|484599|fgenesh2_kg.5__591__AT3G28140.1
Length=777
Score = 531 bits (287), Expect = 4e-150
Identities = 477/565 (84%), Gaps = 28/565 (5%)
Strand=Plus/Plus
Query 102 GTCAGAAGGCTACGCAATCGAGCTATACTTCGATCCAGCACTCGAAAACCAAGTATTGAA 161
|||| ||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct 118 GTCACAAGGCTACGCAATCGAGCTCTACTTCGATCCATCACTCGAGAACCAAGTCTTGAA 177
Query 162 AGCATGGAACGTCTTCGCTCGCCGTCAAATCAGTACCAAA-TTGATCAAC-ACTGAGTCT 219
||| ||||||||||||||||| ||||||||||||| |||| | |||||| || ||||||
Sbjct 178 AGCTTGGAACGTCTTCGCTCGTCGTCAAATCAGTA-CAAACCTAATCAACAAC-GAGTCT 235
Query 220 CGTCCACACATAACACTCTTCTCCA-CCTCCTTCTTCGATTCAACGAGA-CTCGAATCC- 276
|||||||||||||| | |||| || | || ||| |||||||||| | | || ||| ||
Sbjct 236 CGTCCACACATAACTTTATTCT-CATCTTCATTCATCGATTCAAC-AAAGCTTGAA-CCA 292
Query 277 GTCATCAAAAAC-TTCGT-ATCCAAGCAAGAACCAATCTCGATCTCGTTCTCTACTATCG 334
|| | ||| | ||| | ||| || |||||||||||| | |||| |||||| | || |
Sbjct 293 ATC-TTGAAATCATTC-TCATCGAAACAAGAACCAATCGCTCTCTCTTTCTCTTCAATTG 350
Query 335 GTAGCTTCTCTAGCGACAACAACG-TACTGTTTCTATCTCCGACTCCGTCTCTATCGCTT 393
| ||||| ||||| |||||||| | | |||||||| || ||||| |||||||| ||||||
Sbjct 351 GAAGCTTTTCTAGTGACAACAATGCT-CTGTTTCTTTCGCCGACACCGTCTCTTTCGCTT 409
Query 394 CTTCAG-TTGCAGACTCAGTTATGTGATA-TG-TTGAAGAAAGAATCTG-TTGACATTGG 449
|||||| || ||| |||||||||||| | || || ||||||||| | |||| |||||
Sbjct 410 CTTCAGCTT-CAGGTTCAGTTATGTGA-AGTGATT-AAGAAAGAA-GGGTTTGAGATTGG 465
Query 450 TGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCCGTGGCTCTTGATGTTCCTAA 509
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 466 TGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCATGTGGCTATTGATGTTCCTAA 525
Query 510 GTCTCGTATGGCTGA-GGCTTTCTCTG-TGTTGAGAGATTTGAAGCTTCCGGTGAATGGT 567
||| ||||| |||| || ||| | || | |||||||||||||||||||| |||||||||
Sbjct 526 GTCACGTATCTCTGAAGGGTTT-T-TGGTTTTGAGAGATTTGAAGCTTCCTGTGAATGGT 583
Query 568 TATGGTATGGAGATTGGTCTCGTTGAGTTTTCTCCTGTTCGTGAAGTCTTCTCATTTCCT 627
|||| |||||| |||||||| ||| |||||||||||||||||||||||||||| ||| |
Sbjct 584 TATGCTATGGATATTGGTCTTGTTAAGTTTTCTCCTGTTCGTGAAGTCTTCTCTTTTGGT 643
Query 628 CTTGGTAACACTTTGGAGTCTTGAT 652
|||||||||| ||||||||||||||
Sbjct 644 CTTGGTAACAATTTGGAGTCTTGAT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5