BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40210.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330484 jgi|Araly1|330484|fgenesh1_pm.C_scaffold_7002711 1561 0.0
> Ahg330484 jgi|Araly1|330484|fgenesh1_pm.C_scaffold_7002711
Length=1011
Score = 1561 bits (845), Expect = 0.0
Identities = 952/1005 (95%), Gaps = 2/1005 (0%)
Strand=Plus/Plus
Query 30 ATGGTTCATGGAAGGTTATGTAACAGAGATGGCTGGATCTTGACGGCGATGGTGGTGACA 89
|||||||| |||||| |||||||||| || |||| |||||||||||||||||||| ||||
Sbjct 1 ATGGTTCACGGAAGGCTATGTAACAGGGACGGCTTGATCTTGACGGCGATGGTGGCGACA 60
Query 90 GAGTTTTCTAACGTAGGAGTAAACACTCTGGTCAAAGCAGCGACGTCCAAAGGACTTAGC 149
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 61 GAGTTTTCTAACGTCGGAGTAAACACTCTGGTCAAAGCAGCGACTTCCAATGGACTTAGT 120
Query 150 CCATTTGTGGttcttgtatactcttacacttttggatctcttcttcttcttcctcttaca 209
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CCATTCGTGGTTCTCGTATACTCTTACACATTTGGATCTCTTCTTCTTCTTCCTCTTACC 180
Query 210 ttcttctccttcAGATCAAGATCTCTCCCTCCGTTGACATTTTCAATTCTATGCAACATG 269
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TTCTTCTCCTTCAGATCAAGATCTCTCCCTCCGTTGACGTTTTCAATTCTATGCAACATG 240
Query 270 GGGATTCTTGGTCTAATTGCAAGTGCGTTTCAAATCTTAGGCTACAATGGGATAAAATAT 329
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GGGATTCTTGGTCTAATTGTAAGTGCGTCTCAAATCTTAGGCTACAATGGGATAAAATAT 300
Query 330 AGCTCGCCGACTTTATCTTCGGCCATGAGCAATGTCAATCCTGCTTTTACCTTCATCCTC 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTCGCCGACTTTATCTTCGGCCATGAGCAATGTCAATCCTGCTTTTACCTTCATCCTC 360
Query 390 GCCGTTGTTTTTCGAATGGAAAATATATCTCTAGGGAAAAAGAGTAGTGTAGCCAAAGTG 449
|||| |||||| || ||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 361 GCCGCTGTTTTCCGCATGGAGAATATATCTCTAAGGAAAAAGAGTCGTGTAGCCAAAGTG 420
Query 450 TTGGGAACAATATTGTCAATAATAGGTGCACTTGTGGTTACTCTCTACCACGGTCCAATG 509
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 TTGGGAACAATATTGTCAATAATAGGTGCACTTGTTGTGACTCTCTACCACGGTCCAATG 480
Query 510 CTAATGTCTTCACATTCGGATTGGATCATCGGTGGTGGCCTTCTTGCTCTCCAATACATC 569
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TTAATGTCTTCACATTCGGATTGGATCATCGGTGGCGGCCTTCTTGCTCTCCAATACATC 540
Query 570 CTTGTCTCCGTCTCTTACCTTGTTATGGCTCACACAATGGGTCGATATCCATCTGCCGTC 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CTTGTCTCCGTCTCTTACCTTGTTATGGCTCACACAATGGGTCGATATCCATCTGCGGTC 600
Query 630 GTTGTGACGCTTGTGCACAATGTTTGCATAGCTGTTGTGTGTGCATTTGTGAGCCTTTTG 689
||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct 601 GTTGTGACGCTGGTGCACAATGTTTGCATCGCTGTTGTGTCTGCATTCGTGAGTCTTTTG 660
Query 690 GCAGAGAAGGACAATCCGAAGGCATGGGTCATAAGATTCGACATAACCTTAATTACCGTA 749
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 GCAGAGAAGGATAATCCGAAGGCATGGGTCATAAGATTTGACATAACCTTAATTACCGTA 720
Query 750 GTAGCAACGGGGATTTTGAA-TTCGGGATATTATGTTATACATACGTGGGCAGTGAGTCA 808
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 721 GTAGCAACGGGGATTTT-AAGTTCAGGATATTATGTTATACATACGTGGGCAGTGAGTCA 779
Query 809 CAAGGGACCTGTGTATTTGTCTATGTTCAAACCGTTATCTATATTGATAGCAGCCGTATC 868
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 780 TAAGGGACCTGTGTATTTGTCGATGTTCAAACCGTTATCTATATTGATTGCAGCCGTATC 839
Query 869 AACTTTCATTTTCCTCGGCGAGTCGCTCTACCTTGGAAGTGTGATGGGAGGAATATTGAT 928
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AACTTTCATTTTCCTCGGCGAGTCGCTCTATCTTGGAAGTGTGATGGGAGGAATATTGAT 899
Query 929 ATCAATAGGATTTTACATGGTGTTGTGGGGTAAAGCCAAGGAAGACAAAGTTGACATAAT 988
||||||||| |||||||||| ||| |||||||||||||| ||||||||||||| |||| |
Sbjct 900 ATCAATAGGGTTTTACATGGGGTTATGGGGTAAAGCCAAAGAAGACAAAGTTGCCATATT 959
Query 989 AGGAGCAATAGAGTCCTCTCCTTCACATAATGCTCCTCTCTTGGA 1033
|||| | |||||||| |||||||||||||| ||||| ||||||||
Sbjct 960 AGGAACCATAGAGTCGTCTCCTTCACATAAAGCTCCCCTCTTGGA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5