BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40212.1
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947754 jgi|Araly1|947754|scaffold_703983.1 320 8e-87
Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 263 1e-69
> Ahg947754 jgi|Araly1|947754|scaffold_703983.1
Length=247
Score = 320 bits (173), Expect = 8e-87
Identities = 217/238 (91%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 465 GTTATACACACATGGGGTCTCCACCTGAATGGTCCAGTGTATGTATCCTTATTCAAGCCG 524
||||||||||||||||||||||||||||| |||||||| || ||||| || |||||||||
Sbjct 10 GTTATACACACATGGGGTCTCCACCTGAAGGGTCCAGTCTACGTATCTTTGTTCAAGCCG 69
Query 525 TTGTTTATAGCAGTTGCAGTCGTCATGGGTGCTATATTCCTTGGCGATGCACTTCACCTT 584
|||| ||||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct 70 TTGTATATAGCAATTGTAGTCGTCATGGTTGCTATATTCATTGGCGACGCACTTCACCTT 129
Query 585 ---AGTGTGATTGGATCAATGATATTGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAA 641
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAA 189
Query 642 GCAAGAGAAGATGCAGCCAAAATAGCAAGTCTTTCACAGCAGTCACTTTTGTTGCCTA 699
||||||||||||||| |||||| ||||| |||||| || ||||||||||||||||||
Sbjct 190 GCAAGAGAAGATGCAACCAAAACAGCAAATCTTTCTGAGTAGTCACTTTTGTTGCCTA 247
> Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710
Length=1104
Score = 263 bits (142), Expect = 1e-69
Identities = 376/481 (78%), Gaps = 47/481 (10%)
Strand=Plus/Plus
Query 225 TTTTACTTCATTCGAGTCAAGTTGGATAATTGGAGGCCTTTTGATCACTTCACAGTATTT 284
||| ||||| || || || ||||||||||| ||||| |||||| || || ||||||||||
Sbjct 561 TTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGCTACACAGTATTT 620
Query 285 GCTTGTTTCAGTCTGGTATATTCTTCAGG-TACAG-TCATGGAGATCTACCCTGAAGAAA 342
|||||||||||||||||||||||||||| | | | |||||||| | |||||||||||||
Sbjct 621 GCTTGTTTCAGTCTGGTATATTCTTCAGACT-CGGGTCATGGAGTTATACCCTGAAGAAA 679
Query 343 TAACTGTAGTCTTCTTCTACAACTTATGTGGAATGCTAATTTCACCACCAGTTTG-C-A- 399
|||||||||| ||||| ||||||||||| | | ||||| || ||||||| || | |
Sbjct 680 TAACTGTAGTATTCTTGTACAACTTATGCGCAGCACTAATCTCGGCACCAGTATGTCTAT 739
Query 400 --G---AAAAAGACTTGACCTCTTGGC-AGCTTAAACCGGATATTTCC-TCGCTGCAGTC 452
| ||||||||||||| |||| | |||||||||| | | ||| | ||| |||||
Sbjct 740 TTGCGGAAAAAGACTTGACATCTTTTATA-CTTAAACCGGGTGTCTCCCTTGCTTCAGTC 798
Query 453 ATATACTCG------T------C-------GG-T---T-ATACACACATGGGGTCTCCAC 488
|| |||||| | | || | | ||||||||||||||||| ||
Sbjct 799 ATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTATACACACATGGGGTCTGCAT 858
Query 489 CTGAATGGTCCAGTGTATGTATCCTTATTCAAGCCGTTGTTTATAG-CAGTTGCAGTCG- 546
||||| |||||||| || ||||||| ||||||||||||| ||| | || |||| ||||
Sbjct 859 CTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTCA-TTGCGGTCGC 917
Query 547 TCATGGGTGCTATATTCCTTGGCGATGCACTTCACCTTAGT-GTG--ATTGGATCAATGA 603
| ||||||| ||||||||| |||||||||||| ||||||| ||| ||||||||| |||
Sbjct 918 T-ATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCATTGGATCAGTGA 976
Query 604 TAT-TGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAAGCAAGAGAAGATGCAGCCAAA 662
| | ||||||| || || || |||||||||||||| ||||||||||| ||| || |||||
Sbjct 977 T-TCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATTCAACCAAA 1035
Query 663 A 663
|
Sbjct 1036 A 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25885460643
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5