BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40230.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 1805 0.0
Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1 1057 0.0
> Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710
Length=1104
Score = 1805 bits (977), Expect = 0.0
Identities = 1063/1104 (96%), Gaps = 7/1104 (1%)
Strand=Plus/Plus
Query 1 ATGACAAGAGGAGCAGGAGGGGAGACAGTGGCATGGAGTTACTTTTGCAGAGATGTTGTG 60
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGACAAGAGGAGCAGGAGAGGAGACAGTGGCATGGAGTTACTATTGCAGAGATGTTGTG 60
Query 61 CCGTTCACTGCAATGGTCGCGGTGGAGTGTGTTACGGTTGGATCTAATACACTGTTCAAG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CCGTTCACTGCAATGGTCGCGGTGGAGTGTGTCACGGTTGGATCTAATACACTGTTCAAG 120
Query 121 GCTGCGACATTGCGAGGATTGAGCTTCTATGTCTTTGTCTTCTATACCTATGTTGTTGCT 180
|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 121 GCTGCGACATTGAGAGGATTAAGCTTTTATGTCTTTGTCTTCTATACCTATGTTGGTGCT 180
Query 181 ACACTTGTTCTTCTTCCACTTTCCCTCATTTTTGGAAGGTCAAAACGATTACCTTCTGCC 240
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 181 ACACTTGTTCTTCTTCCACTTTCCCTCATCTTTGGAAGGTCAAAAAGATTACCTTCAGCC 240
Query 241 AAGACCCCTGTCTTCTTCAATATTTTCTTACTTGCGCTTGTTGGGTTCATGTCTCTGATA 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 AAAACCCCTGTCTTCTTCAATATTTTCTTACTTGCGCTTGTCGGGTTCATGTCACTGATA 300
Query 301 GTTGGTTGTAAAGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGGTTGTAAAGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTG 360
Query 361 ACACCAGCTTTCACATTTACGCTCGCCGTTATCTTCAGAATGGAACAAATAGTCTTAAGG 420
|| |||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||
Sbjct 361 ACGCCAGCTTTCACATTCACCCTCGCCGTTATCTTCAGGATGGAACAAGTAGTCTTAAGG 420
Query 421 AGCTCCGCGACTCAGGCCAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTCCGCGACTCAGGCTAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTT 480
Query 481 GTTATTCTTTATAAAGGCCCTAAAGTTCTAACTGATGCATCTCTTACACCTCCATCACCT 540
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GTTGTTCTTTATAAAGGCCCTAAAGTTCTAACTGATGCAACTCTTACACCTCCATCACCT 540
Query 541 ACCATTTCGCTTTACCAGCATTTGACTTCATTTGATTCGAGTTGGATAATCGGAGGTCTT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ACCATTTCGCTTTACCAGCATTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTT 600
Query 601 TTGCTCGCTACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGCTCGCTACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATG 660
Query 661 GAGTTATACCCTGAAGAAATAACTGTAGTATTCTTGTATAACTTATGCGCTA-CGCTTAT 719
|||||||||||||||||||||||||||||||||||||| ||||||||||| | | || ||
Sbjct 661 GAGTTATACCCTGAAGAAATAACTGTAGTATTCTTGTACAACTTATGCGC-AGCACTAAT 719
Query 720 CTCGGCACCAGTATGTCTATTTGCGGAAAAAGACTTGA-ATTCTTTTATACTTAAACCGG 778
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 720 CTCGGCACCAGTATGTCTATTTGCGGAAAAAGACTTGACAT-CTTTTATACTTAAACCGG 778
Query 779 GTGTCTCCCTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGTCTCCCTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTA 838
Query 839 TACACACTTGGGGTCTGCATCTTAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGT 898
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 TACACACATGGGGTCTGCATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGT 898
Query 899 CTATTGTCATTGCGGTCGCTATGGGTGTTATGTTCCTCGGCGATGCACTTTACCTTGGGA 958
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 899 CTATTGTCATTGCGGTCGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGA 958
Query 959 GTGTCATTGGATCATTGATTTTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAA 1018
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGTCATTGGATCAGTGATTCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAA 1018
Query 1019 GAGAGGATTCAATCAAAACTGTGGCTGGTACTGAGCAG---TCCCCTTTGTTGCCTTCAC 1075
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1019 GAGAGGATTCAACCAAAACTGTGGCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTTCAC 1078
Query 1076 ACACCATAGAAGAAGAAGCCTCAT 1099
||||||||||||| ||||||||||
Sbjct 1079 ACACCATAGAAGATGAAGCCTCAT 1102
> Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1
Length=1228
Score = 1057 bits (572), Expect = 0.0
Identities = 944/1121 (84%), Gaps = 35/1121 (3%)
Strand=Plus/Plus
Query 22 GAGACAGTGGCATGGAGTTACTTTT-GCAGAGATGTTGTGCCGTTCACTGCAATGGTCGC 80
|||| |||||| ||||| || |||| |||||||||||||||||| |||| ||| | ||
Sbjct 85 GAGAAAGTGGCGTGGAGGTA-TTTTACCAGAGATGTTGTGCCGTTTGCTGCTATGTTTGC 143
Query 81 GGTGGAGTGTGTTACGGTTGGATCTAATACACTGTTCAAGGCTGCGACAT-TGCGAGGAT 139
|||||||||| |||||||| || || |||||||| |||||||| || | | ||||||
Sbjct 144 GGTGGAGTGTACCACGGTTGGGTCAAACACACTGTTTAAGGCTGCAAC-TATAAGAGGAT 202
Query 140 TGAGCTTCTATGTCTTTGTCTTCTA-TACCTATGTTGTTGCTACACTTGTTCTTCTTCCA 198
||||||||||||||||||||||||| | | ||||||||| | |||||| | |||||||||
Sbjct 203 TGAGCTTCTATGTCTTTGTCTTCTACT-CTTATGTTGTTTCAACACTTCTCCTTCTTCCA 261
Query 199 CTTTCCCTCATTTTTGGAAGGTCAA-AACGATTACCTTCTGCCAAGACCCCTGTCTTCTT 257
||||| | || ||||||||||||| || ||||||| || |||||| | ||| |||||||
Sbjct 262 CTTTCTTTAATCTTTGGAAGGTCAAGAA-GATTACCATCAGCCAAGTCTCCTCTCTTCTT 320
Query 258 CAATATTTTCTTACTTGCGCTTGTTGGGTTCATGTCTCTGATAGTTGGTTGTAAAGGTAT 317
||| ||||||||||||| |||||| ||||||||||| | ||||| |||||||||||||||
Sbjct 321 CAAGATTTTCTTACTTGGGCTTGTCGGGTTCATGTCGCAGATAGCTGGTTGTAAAGGTAT 380
Query 318 AGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTGACACCAGCTTTCACATT 377
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 381 AGAATATAGTTCCCCAACTCTTGCCTCTGCTATCAGCAATCTCACACCCGCTTTCACATT 440
Query 378 TACGCTCGCCGTTATCTTCAGAATGGAACAAAT-AGTCTTAAGGAGCTCCGCGACTCAGG 436
||||| || ||||||||||| ||||||||| | || ||||| ||||| ||||||||||
Sbjct 441 CACGCTTGCTGTTATCTTCAGGATGGAACAAGTAAG-GTTAAGAAGCTCTGCGACTCAGG 499
Query 437 CCAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTTGTTATT-CTTTATAAA 495
| |||||||||||| | ||| ||||||||||||||||| |||| ||| || || || |||
Sbjct 500 CTAAAATCATTGGCGCAATACTATCTATATCTGGTGCTCTGGTAGTT-TTGCTATACAAA 558
Query 496 GGCCCTA-AAGTTCTAACTGATGCATCTCTTACACCTCCATCACCTACCATTTCGCTTTA 554
||||| | ||||||| ||| ||||||| |||||||| ||||||||||||||| ||| |
Sbjct 559 GGCCC-ACAAGTTCTCGCTGCTGCATCTTTTACACCTTTATCACCTACCATTTCACTTCA 617
Query 555 CCAGCATTTGACTTCATTTGATTC-GAGTTGGATAATCGGAGGTCTTTTGCTCGCTACAC 613
||||||||| || ||||| || || || |||||||||||||| || || || ||| |||
Sbjct 618 CCAGCATTTCACCTCATTAGAGTCAAAG-TGGATAATCGGAGGGCTCTTACTTGCTTCAC 676
Query 614 AGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGAGTTATACCCTG 673
||||||| ||| | |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 677 AGTATTTTCTTATATCAGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTATACCCTG 736
Query 674 AAGAAATAACTGTAGTATTCTTGTATAACTTATGCGCTACGCTTATCTCGGCACCAGTAT 733
|||||||||| ||||| ||||| || ||||||| || || || ||||| | ||||||||
Sbjct 737 AAGAAATAACGGTAGTCTTCTTCTACAACTTATTTGCAACACTAATCTCAGTACCAGTAT 796
Query 734 GTCTAT-TTGCGGA-AAAAGACTTGAATTCTTTTATACTTAAACCGGGTGTCTCCCTTGC 791
|||| | ||||||| | | |||||| ||||| |||||||||| | | ||||| ||
Sbjct 797 GTCT-TCTTGCGGAGAGCA-ACTTGACTTCTTGGGTACTTAAACCAGACATTTCCCTCGC 854
Query 792 TTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATT-TG-GCTCAGTTATACACACTTGG 849
| || |||| ||||||||| ||| ||||||| ||| | |||| ||| ||||| |||
Sbjct 855 TACAATCATATACTCGGGAATCTTCGTTTCATTATTCAGCGCTC--TTACCCACACATGG 912
Query 850 GGTCTGCATCTTAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTC-AT 908
||||||||||| |||||||| || |||||||| ||||||| ||| |||||||||| | ||
Sbjct 913 GGTCTGCATCTGAAGGGTCCGGTATACATATCTTTGTTCAGGCCATTGTCTATTG-CGAT 971
Query 909 TGCGGTCGCTATGGGTGTTATGTTCCTCGGCGATGCACTTTACCTTGGGAGTGTCATTGG 968
||| ||||||||||||| ||| |||||||||||| | ||| |||||||||||||||||||
Sbjct 972 TGCAGTCGCTATGGGTGCTATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTCATTGG 1031
Query 969 ATCATTGATTTTGAGC-TTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATT 1027
|||| |||| ||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATCAGTGATATTGTGCATT-GGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATA 1090
Query 1028 CAATCAAAACTGTGGCTGGTACTGAGCAGTCCCCTTTGTTGCCTT-CACACACCATAGAA 1086
||||||||||||| |||| | |||||||||| |||||| ||| || |||| | |||||||
Sbjct 1091 CAATCAAAACTGTAGCTGATTCTGAGCAGTCACCTTTGCTGC-TTACACATATCATAGAA 1149
Query 1087 GAAGAAGCCT--C-ATTAAGCT-GTGACTGATGCAAGTGGA 1123
|| ||||||| | ||||| | | || |||||||||||||
Sbjct 1150 GATGAAGCCTTTCCATTAAATTAG-GATTGATGCAAGTGGA 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5