BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40240.2
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1 1757 0.0
Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710 981 0.0
Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 431 7e-120
> Ahg493967 jgi|Araly1|493967|fgenesh2_kg.7__3400__AT5G40240.1
Length=1228
Score = 1757 bits (951), Expect = 0.0
Identities = 1085/1151 (94%), Gaps = 4/1151 (0%)
Strand=Plus/Plus
Query 56 GAGAAGAGAAAGTGGCGTGGAAGTACTTTACCAGAGATGTTGTGCCGTTTGCTGCGATGT 115
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 80 GAGAAGAGAAAGTGGCGTGGAGGTATTTTACCAGAGATGTTGTGCCGTTTGCTGCTATGT 139
Query 116 TTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTAAGAG 175
|||||||||||||| |||| |||||||||||||| |||||||||||||| ||| ||||||
Sbjct 140 TTGCGGTGGAGTGTACCACGGTTGGGTCAAACACACTGTTTAAGGCTGCAACTATAAGAG 199
Query 176 GATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATATTGTTTCAACACTTCTCCTTCTTC 235
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 200 GATTGAGCTTCTATGTCTTTGTCTTCTACTCTTATGTTGTTTCAACACTTCTCCTTCTTC 259
Query 236 CACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCTTTTCT 295
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 260 CACTTTCTTTAATCTTTGGAAGGTCAAGAAGATTACCATCAGCCAAGTCTCCTCTCTTCT 319
Query 296 TCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAAAGGTA 355
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 320 TCAAGATTTTCTTACTTGGGCTTGTCGGGTTCATGTCGCAGATAGCTGGTTGTAAAGGTA 379
Query 356 TTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTTCACAT 415
| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 380 TAGAATATAGTTCCCCAACTCTTGCCTCTGCTATCAGCAATCTCACACCCGCTTTCACAT 439
Query 416 TCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAGGTTAAGGAGCTCTGCGACTCAGG 475
|||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 440 TCACGCTTGCTGTTATCTTCAGGATGGAACAAGTAAGGTTAAGAAGCTCTGCGACTCAGG 499
Query 476 CTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGTATAAAG 535
||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 500 CTAAAATCATTGGCGCAATACTATCTATATCTGGTGCTCTGGTAGTTTTGCTATACAAAG 559
Query 536 GCCCACAAGTTCTCGCCT-CTGCATCTTTTACAACTGTATTACCTACCGTTACACTTCAC 594
||||||||||||||| || |||||||||||||| || ||| ||||||| || ||||||||
Sbjct 560 GCCCACAAGTTCTCG-CTGCTGCATCTTTTACACCTTTATCACCTACCATTTCACTTCAC 618
Query 595 CAGCAGTTGACCTCAATAGAGTC-AAGCTGGATAATCGGAGGGCTCTTGCTTGCTTCACA 653
||||| || |||||| ||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 619 CAGCATTTCACCTCATTAGAGTCAAAG-TGGATAATCGGAGGGCTCTTACTTGCTTCACA 677
Query 654 GTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGA 713
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 678 GTATTTTCTTATATCAGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTATACCCTGA 737
Query 714 AGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTACCAGTATG 773
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 AGAAATAACGGTAGTCTTCTTCTACAACTTATTTGCAACACTAATCTCAGTACCAGTATG 797
Query 774 TCTTTTTGCGGAGAGCAACTTGACTTCTTGGGTGCTTAAACCAGACATTTCCCTCGCTGC 833
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 798 TCTTCTTGCGGAGAGCAACTTGACTTCTTGGGTACTTAAACCAGACATTTCCCTCGCTAC 857
Query 834 AATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGCGCTTACCCACACATGGGGTCT 893
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 858 AATCATATACTCGGGAATCTTCGTTTCATTATTCAGCGCTCTTACCCACACATGGGGTCT 917
Query 894 GCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGT 953
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 918 GCATCTGAAGGGTCCGGTATACATATCTTTGTTCAGGCCATTGTCTATTGCGATTGCAGT 977
Query 954 CGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAAT 1013
||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 978 CGCTATGGGTGCTATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTCATTGGATCAGT 1037
Query 1014 GATATTGTGCATTGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAA 1073
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1038 GATATTGTGCATTGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATACAATCAA 1097
Query 1074 AACTGTAGCTGGTTCTGAGCAGTCACCTTTGCTGCTTACACATATCATAGAAGATGGAGC 1133
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1098 AACTGTAGCTGATTCTGAGCAGTCACCTTTGCTGCTTACACATATCATAGAAGATGAAGC 1157
Query 1134 CTTTCCATTAAGCTAGGATTGATGCAAGTGAAATCCTTATACTATTTATTAATAAATATG 1193
||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1158 CTTTCCATTAAATTAGGATTGATGCAAGTGGATTCCTTATACTATTCATTAATAAATATG 1217
Query 1194 GATCCCTAAAA 1204
|||| |||||
Sbjct 1218 TATCCTTAAAA 1228
> Ahg330483 jgi|Araly1|330483|fgenesh1_pm.C_scaffold_7002710
Length=1104
Score = 981 bits (531), Expect = 0.0
Identities = 914/1098 (83%), Gaps = 29/1098 (3%)
Strand=Plus/Plus
Query 54 AGGAGAAGAGAAAGTGGCGTGGAAG-TACT-TTACCAGAGATGTTGTGCCGTTTGCTGCG 111
|||||| |||| |||||| ||| || |||| || |||||||||||||||||| ||||
Sbjct 15 AGGAGAGGAGACAGTGGCATGG-AGTTACTATT-GCAGAGATGTTGTGCCGTTCACTGCA 72
Query 112 ATGTTTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTA 171
||| | ||||||||||||| ||| ||||| || || || ||||| |||||||| || ||
Sbjct 73 ATGGTCGCGGTGGAGTGTGTCACGGTTGGATCTAATACACTGTTCAAGGCTGCGACATTG 132
Query 172 AGAGGATTGAGCTTCTATGTCTTTGTCTTCTACT-CTTATATTGTTTCAACACTTCTCCT 230
|||||||| ||||| ||||||||||||||||| | | ||| ||| | | |||||| | ||
Sbjct 133 AGAGGATTAAGCTTTTATGTCTTTGTCTTCTA-TACCTATGTTGGTGCTACACTTGTTCT 191
Query 231 TCTTCCACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCT 290
|||||||||||| | |||||||||||||||| ||||||||| |||| || | ||| |
Sbjct 192 TCTTCCACTTTCCCTCATCTTTGGAAGGTCAAAAAGATTACCTTCAGCCAAAACCCCTGT 251
Query 291 TTTCTTCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAA 350
|||||||| ||||||||||||| |||||| ||||||||||| | ||| | |||||||||
Sbjct 252 CTTCTTCAATATTTTCTTACTTGCGCTTGTCGGGTTCATGTCACTGATAGTTGGTTGTAA 311
Query 351 AGGTATTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTT 410
|||||| | ||| ||||| ||||||||||| ||||||||||||||||| || || |||||
Sbjct 312 AGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTGACGCCAGCTTT 371
Query 411 CACATTCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAG-GTTAAGGAGCTCTGCGA 469
||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 372 CACATTCACCCTCGCCGTTATCTTCAGGATGGAACAAGT-AGTCTTAAGGAGCTCCGCGA 430
Query 470 CTCAGGCTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGT 529
||||||||||||||||||| | ||| ||||||||||||||||| |||| ||||| || |
Sbjct 431 CTCAGGCTAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTTGTTGTTCTTT 490
Query 530 ATAAAGGCCC-ACAAGTTCTCGCCT-CTGCATCTTTTACAACTGTATTACCTACCGTTAC 587
|||||||||| | ||||||| || |||| || ||||| || || ||||||| || |
Sbjct 491 ATAAAGGCCCTA-AAGTTCT-AACTGATGCAACTCTTACACCTCCATCACCTACCATTTC 548
Query 588 ACTTCACCAGCAGTTGACCTCAATAGAGTCAAGCTGGATAATCGGAGGGCTCTTGCTTGC 647
||| ||||||| ||||| || | || || || |||||||||||||| || ||||| ||
Sbjct 549 GCTTTACCAGCATTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGC 608
Query 648 TTCACAGTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTT-T 706
| |||||||||| ||| | || ||||||||||||||||||||||| |||||||| ||| |
Sbjct 609 TACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGA-GTTAT 667
Query 707 ACCCTGAAGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTAC 766
|||||||||| ||||| ||||| ||||| ||||| |||| ||| |||||||||| | ||
Sbjct 668 ACCCTGAAGAAATAACTGTAGTATTCTTGTACAACTTATGCGCAGCACTAATCTCGGCAC 727
Query 767 CAGTATGTCTTTTTGCGGAGAGCA-ACTTGACTTCTTGGGTGCTTAAACCAGACATTTCC 825
|||||||||| |||||||| | | ||||||| |||| | |||||||| | | |||
Sbjct 728 CAGTATGTCTATTTGCGGA-AAAAGACTTGACATCTTTTATACTTAAACCGGGTGTCTCC 786
Query 826 CTCGCTGCAATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACAC 884
|| ||| || |||| |||||||||| ||| ||||||| ||| || | | ||| |||||
Sbjct 787 CTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAG-TTATACACAC 845
Query 885 ATGGGGTCTGCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTG- 943
|||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||
Sbjct 846 ATGGGGTCTGCATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGT 905
Query 944 CGATTGCAGTCGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCA 1003
| ||||| ||||| ||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 906 C-ATTGCGGTCGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCA 964
Query 1004 TTGGATCAATGATAT-TGTGCATT-GGATTCTACACTGTGATTTGGGGCAAAGCAAGAGA 1061
|||||||| |||| | || || || ||||||||||||||||||||||| |||||||||||
Sbjct 965 TTGGATCAGTGAT-TCTGAGC-TTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGA 1022
Query 1062 GGATACAATCAAAACTGTAGCTGGTTCTGAGCAG---TCACCTTTGCTGC-TTACACATA 1117
|||| ||| ||||||||| |||| | |||||||| || |||||| ||| || |||| |
Sbjct 1023 GGATTCAACCAAAACTGTGGCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTT-CACACA 1081
Query 1118 TCATAGAAGATGGAGCCT 1135
||||||||||| |||||
Sbjct 1082 CCATAGAAGATGAAGCCT 1099
> Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1
Length=1170
Score = 431 bits (233), Expect = 7e-120
Identities = 422/512 (82%), Gaps = 18/512 (4%)
Strand=Plus/Plus
Query 613 GAGTCAAGCTGGATAATCGGAGGGCTCTTGCT-TG-CTTCACAGTAT-TTTCTTATATCC 669
||||| || |||||||| ||||| || ||||| | || || | | | || ||| | ||
Sbjct 531 GAGTCTAGTTGGATAATTGGAGGCCTTTTGCTCGGTCTGCA-A-T-TCTTGCTTCTTTCA 587
Query 670 GTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGAAGAGATAACCGTAGTC 729
||||||| |||||||||||||| | |||||||| | ||||||||||| ||| ||||||
Sbjct 588 GTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGTTGTAGTC 647
Query 730 TTCTTCTACAATTTATTTGCAACACTAATCTCA-GTACCAGTATGTCTTTTTGCGGAGAG 788
|||| |||||| |||| ||||| ||||||||| | | ||||||||| |||| || |
Sbjct 648 TTCTGCTACAACTTATGCGCAACGCTAATCTCAGGGA-TAGTATGTCTACTTGCAGA-AA 705
Query 789 CA-ACTTGACTTCTTGGGTGCTTAAACCAGACATT-TCCCTCGCTGCAATCATATACTCG 846
| |||||| ||||||| ||||||||| | || ||||||||| || |||||||||||
Sbjct 706 AAGACTTGAATTCTTGGCAGCTTAAACCTG-GTTTCTCCCTCGCTTCAGTCATATACTCG 764
Query 847 GGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACACATGGGGTCTGCATCTGAAGGG 905
||| |||| | | ||| ||| || | | ||| ||||||||||||||| ||| |||||||
Sbjct 765 GGACTCTTTGATACATCATTGGGCTCAG-TTATCCACACATGGGGTCTTCATGTGAAGGG 823
Query 906 TCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGTCGCCATGGGTGC 965
|||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 824 TCCGGTCTACGTATCCTTGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGC 883
Query 966 TATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAATGATATTGTGCAT 1025
|||||||||||||||| | ||||||||||||||||| ||||||||| |||||||| || |
Sbjct 884 TATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTT 943
Query 1026 TGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAA-AACTGTA-GCT 1083
||| || ||||||||||||||||||||||||||||||||| ||| | | ||| ||| | |
Sbjct 944 TGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATGCAA-CTATAACAGTAAG-T 1001
Query 1084 GGTTCTGAGCAGTCACCTTTGCTGCTTACACA 1115
| |||||||||||||| ||| ||| ||||||
Sbjct 1002 GATTCTGAGCAGTCACTTTTATTGCCTACACA 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50474742108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5