BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40250.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493966 jgi|Araly1|493966|fgenesh2_kg.7__3399__AT5G40250.1 2767 0.0
> Ahg493966 jgi|Araly1|493966|fgenesh2_kg.7__3399__AT5G40250.1
Length=1772
Score = 2767 bits (1498), Expect = 0.0
Identities = 1689/1780 (95%), Gaps = 18/1780 (1%)
Strand=Plus/Plus
Query 1 ATAGAAGAGAGAGAAAGGACGAAGAAAGAGAGTTCCTTTAACTCTCTCTTCTTCCTCTGC 60
||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATAGAAGAGAGAGAAAGCAAGAGGAAAGAGAGTTCCTTT-ACTCTCTCTTCTTCCTCTGC 59
Query 61 AAATCTGACATA-TTGAACCAAACCaaaaaaaGCCCTCTTTGATTAGGGTTTTGTGTCA- 118
|||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 60 AAATCTGACATATTTGAA--AAAATTAAAAAAGCCCTCTTTGATTAGGGTTTTGTCTCAC 117
Query 119 --------AGATTCTGGAGAGAGCTTTTAGGTGAGTTTTGTGTATCTCTGATGTTGATGT 170
||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTTTTCTGAGAATCTGGAGGGAGCTTTTAGGTGAGTTTTGTGTATCTCTGATGTTGATGT 177
Query 171 TATTGAAATTGGAACTCTTCTCCACTTAACTTGgagttgttttgttttttgattgagctt 230
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 178 TATTGAAATTGGAACTCTTCTCCACTTAACTTGGAGTTG-TTTG-TTTTTGATTGAGCTT 235
Query 231 ttgagatcttgaaaattgagatcttggagttgtttgtttCTAAGTGACCTAAATCTTACA 290
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 236 TTGAGATCTTGAAAATTGAGATCTTTTTTTTTTTTGTTTCTAAGTGACCTAAATCTTACA 295
Query 291 AGATGTCTTGGGTTCGATTCACAATTGAGCAAAAAGATGGGAACTTTGCGTACCCACCAC 350
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGATGTCTTGGGTTCGATTCAAAATTGAGCAAAAAGATGGGAACTTTGCGTACCCACCAC 355
Query 351 CGTTTTACAAAGACCCAATTCTTTCTCCGCCGTCTCCTCCACCACCGTCGTCCGGTAACA 410
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 CGTTTTACAAAGACCCAATTCTTTCTCCGCCGTCTCCTCCGCCACCGTCGTCCGGTAACA 415
Query 411 GAATCAGTCCGGCGGTTTTGTTTGTAATTGTGATTCTAGCTGTCTTGTTCTTCATTTCTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAATCAGTCCGGCGGTTTTGTTTGTAATTGTGATTCTAGCTGTCTTGTTCTTCATTTCTG 475
Query 471 GGCTTCTTCATTTGCTCGTCAGGTTTCTTATTAAGCATCCTTCTGCTACTGCTTCTTCAA 530
|||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||
Sbjct 476 GGCTTCTTCATTTGCTGGTTAGGTTTCTTATTAAACATCCTTCTGCTACTTCTTCTTCAA 535
Query 531 GGTCTAATAGATTCCCAGAGATCTCAACTAGTGATGCTCTTCAAAGACAGCTTCAACAGC 590
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 536 GGTCTAATAGATTCCCTGAGATTTCAACTAGTGATGCTCTTCAAAGGCAGCTTCAACAGC 595
Query 591 TTTTTCATTTGAATGATTCTGGTCTTGATCAAGCTTTTATCGATGCTTTACCTGTTTTTC 650
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 596 TTTTTCATTTGAATGATTCTGGTCTTGATCAAGCTTTTATTGACGCTTTACCTGTTTTTC 655
Query 651 ACTACAAGGAGATTGTTGGTAGTGCTGGTGGTGGTGGTGGTAATGGTGCTGCTCAAGAGC 710
||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 656 ACTACAAAGAGATTGTTGGTAGTGGTAGTG-T--TGGTGGTAATGGTGCTGCTCAAGAGC 712
Query 711 CGTTTGATTGCGCGGTTTGTCTCTGTGAGTTCTCTGAGAAAGATAAGCTGAGGTTGTTGC 770
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 713 CATTTGATTGCGCGGTTTGTCTCTGTGAGTTTTCTGAGAAAGATAAGCTGAGATTGTTGC 772
Query 771 CAATGTGTAGCCATGCTTTTCATTTGAACTGTATTGATACTTGGCTTCAGTCAAATTCGA 830
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CAATGTGTAGTCATGCTTTTCATTTGAACTGTATTGATACTTGGCTTCAGTCAAATTCGA 832
Query 831 CTTGTCCTCTTTGTCGTGGTACTCTCTTTTCCCCTGGTTTCTCAATGGAGAACCCGATGT 890
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 833 CTTGTCCTCTTTGTCGTGGCACACTCTTTTCCCCTGGTTTCTCAATGGAGAACCCGATGT 892
Query 891 TTGATTTCGATGATATAAGAGAAGACGAAGAGGGTGTGACCGAGAATGGAAGTCAGAAAA 950
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 893 TTGATTTCGATGATATAAGAGAAGATGAAGAGGGTGTGACAGAGAATGGAAGCCAGAAAA 952
Query 951 CTATGGAGATTCAAGAAATCGTTGTGGAGAAAGGTGTTTTACCGGTTAGATTGGGGAAAT 1010
|||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 953 CTATGGAGATCCAAGAAATTGTTGTGGAGAAAGGAGTTTTACCGGTGAGATTGGGGAAAT 1012
Query 1011 TTAAGAGGCTTGACAATGTTGGTAATGGCCAAGGTCAGGATGTTGTTGCCGGAGGAGAGA 1070
| |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1013 TCAAGAGGCTAGACAATGTTGGTAATGGTCAGGGTCAGGATGTTGTTGCTGGAGGAGAGA 1072
Query 1071 CTAGTAGTAGTAATTTGGATGCAAGGAGATGTTTCTCAATGGGTTCGTATCAGTATATAC 1130
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CTAGTAGCAGTAATTTGGATGCAAGGAGATGTTTCTCAATGGGTTCGTATCAGTATATAC 1132
Query 1131 TCGGTAACTCGGAACTTAAAGTCCCGTTTGCCAACGACAGACTGCCGCGTTTGAAACCTC 1190
|||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1133 TCGGTAACTCAGAACTTAAAGTCCCGTTTGCCAAAGATAGACTGCCGAGTTTGAAACCTC 1192
Query 1191 AGGACAAAGAATCTGAGCAGACAGGGAATTCATCATCAGAAGACAATAAAAAGATCAATA 1250
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1193 AGGACAAAGAATCTGAGCAGACAGGGAATACATCATCAGAAGACAACAAAAAGATCAATA 1252
Query 1251 CTGTGGCTAAAGGAGAGAGCTTTTCGGTTTCGAAGATTTGGTTGTGGCCTAAGAAAGATA 1310
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1253 GTGTGGCTAAAGGCGAGAGCTTTTCGGTTTCGAAGATTTGGTTGTGGCCAAAGAAAGATA 1312
Query 1311 AGTTCTCTTCAGATGCTCAAAGAAGGTTGCCTTCTTCATCACTTAACGTTGATGATCTTC 1370
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 AATTCTCTTCAGATGCTCAAAGAAGGTTGCCTTCTTCATCACTTAACGTAGATGATCTTC 1372
Query 1371 CGAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGACGGAAGGTAGTATCTTT 1430
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1373 CGAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGACGAAAGGTAGTATCTTT 1432
Query 1431 TGCTCATTTTTCAACCAAAATCATCGATACTTAGGGTTGTTACTGATCATATTTTGGGGG 1490
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TGCTCATTTTTCAATCAAAATCATCGATACTTAGGGTTGTTACTGATCATATTTTGGGGG 1492
Query 1491 GTTCGTAATCATATGTTGTACCATATTGTTCAAAAGGGTTTAATTCTTGATAAGAACTTC 1550
|||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1493 GTTCACAATTATCTGTTGTACCATATTGTTCAAAAGGGTTTGATTCTTGATAAGAACTTC 1552
Query 1551 AGTTGGATTATGCTTGTTAATCATATGAGATCAAATTTAATTATGCATGCTCAACAAAAA 1610
||||| ||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||
Sbjct 1553 AGTTGCATTATGCTTGTTAATCATATGAGATGAAATTAAATTACGTATGCTCAACAATAA 1612
Query 1611 TGGATTCCAAAAGACTGATGCTTTAGctttattttcattatctttgtctcttttttcttc 1670
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1613 TGGATTCCAAAAGACTGATGCTTTAGCTTTATTTTTATTATCTTTGTCTCTTTTTTCTTC 1672
Query 1671 actttggggtcactggttctctttattttcttcttttccatatactttcctttACTCTCT 1730
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 ACTTTGGAGTCACTGGTTCTCTTTATTTTCTTCTTTTCCATATACTTTCCTTTACTCTCT 1732
Query 1731 CAACAAATTCACTGTTAACTTTATAAATATAAATGTATTT 1770
||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CAACAAATTCACTGTTAACTTTATAAATATAAATGTATTT 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5