BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40260.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493964 jgi|Araly1|493964|fgenesh2_kg.7__3397__AT5G40260.1 1105 0.0
> Ahg493964 jgi|Araly1|493964|fgenesh2_kg.7__3397__AT5G40260.1
Length=983
Score = 1105 bits (598), Expect = 0.0
Identities = 790/878 (90%), Gaps = 32/878 (4%)
Strand=Plus/Plus
Query 2 ATTAGGttttcttctacacttgttcttcttcatttgctctcttcttc-atcaatctctct 60
|||||||||||||||||||||| ||||||||||| || ||||||||| ||| |||||||
Sbjct 1 ATTAGGTTTTCTTCTACACTTGGTCTTCTTCATTAGCGCTCTTCTTCAATC--TCTCTCT 58
Query 61 ct-ttttGTAAACGGCGATTTTAAAATGGTTGATGCAAAACAAGTTCGTTTCATCATCGG 119
|| |||| | |||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 59 CTCTTTT-T--ACGGCGATTTCACAATGGTTGATGCGAAACAAGTTCGTTTCATCATCGG 115
Query 120 AGTTATCGGAAATGTTATCTCCTTTGGTCTCTTTGCCGCACCAGCGAAGAC-TTTCTGGA 178
||||||||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 116 AGTTATCGGGAATGTTATCTCCTTTGGCCTCTTTGCCGCACCAGCGAAAACGTTT-TGGA 174
Query 179 GGATCTTCAAGAAGAAATCAGTGGAAGAGTTTTCGTATGTGCCGTACGTAGCAACGGTGA 238
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 175 GGATCTTCAAGAAGAAATCAGTGGAGGAGTTTTCGTATGTGCCATACGTAGCAACGGTGA 234
Query 239 TGAATTGTATGTTGTGGGTGTTTTACGGTCTCCCTGTGGTTCACAAAGACAG-TATTCTA 297
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 235 TGAATTGTATGTTGTGGGTGTTTTACGGTCTCCCTGTGGTTCACAAAGATAGTTA-TCTA 293
Query 298 GTTTCAACCATTAATGGTGTTGGGTTAGTTATCGAACTTTTCTACGTTGGTGTCTACTTG 357
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 GTGTCTACCATTAATGGTGTTGGGTTAGTCATCGAACTTTTCTACGTTGGTGTCTACTTG 353
Query 358 ATGTACTGTGGTCACAAGAAGAACCATCG-AAGGAACATTTTGGGATTCTTAGC-TCTTG 415
|||||||||||||||||| ||||| |||| || ||| |||||| || |||| | | ||
Sbjct 354 ATGTACTGTGGTCACAAGCAGAACTATCGTAA-GAAGATTTTGCTATACTTA-CTTGGTG 411
Query 416 AAGTTATTT-TGGTGGTGGCTATCATTCTTATTACGCTCTTTGCGCTTAAGGGTGATTTT 474
||||| ||| | || | | |||| |||||||||||||||| | | ||||| ||||||
Sbjct 412 AAGTTGTTTCT-GTTGCGATTATCGTTCTTATTACGCTCTTCGTGATTAAGAATGATTTC 470
Query 475 GTTAAGCAAACATTTGTTGGTGTGATTTGCGATGTCTTCAACATTGCTATGTATGGAGCT 534
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||| | ||
Sbjct 471 ATTAAGCAAACATTTGTTGGTATTATTTGCGATATCTTCAACATTGCTATGTATGCATCT 530
Query 535 CCTTCATTGGCCATTATTAAAGTGGTAAAAACAAAGAGTGTTGAATACATGCCATTCTTG 594
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CCTTCATTGGCCATTATTACAGTGGTAAAAACAAAGAGTGTTGAATACATGCCATTCTTG 590
Query 595 TTGTCTTTGGTCTGTTTCGTTAATGCTGGAATTTGGACTACTTACTCGCTCATCTTCAAG 654
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 591 TTGTCTTTGGTCTGTTTCGTTAATGCTGCAATTTGGACTTCTTACTCGCTCATCTTCAAG 650
Query 655 ATCGATTACTACGTCCTCGCAAGTAATGGGATTGGAACCTTTTTGGCACTTTCTCAGTTG 714
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 651 ATCGATTACTACGTCCTCGCAAGTAATGGGATTGGAACGTTTTTGGCCCTTTCTCAGTTG 710
Query 715 ATAGTGTACTTCATGTACTATAAGTCAACTCCAAAG--G-AGAAGACGGTGAAGCCATCA 771
||||||||||| |||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 711 ATAGTGTACTTTATGTACTACAAATCAACTCCAAAGAAGGAGAAGACGGTGAAGCCATCA 770
Query 772 GAAGTTGAGATTTCTGCTACGGAGAGGGTTTAGGAGAATTGTGCTTTGGATTCTATCTTC 831
|||||||||||| | || ||| | ||||||| | | |||||||||| |||||
Sbjct 771 GAAGTTGAGATTCCGGCAACGAACAGGGTTT-G-A--------CTTTGGATTCAATCTTT 820
Query 832 TTACGTACATTTTACATACACAATTTGTGTGTATGTTT 869
||||||||||| |||||||||||||||||||||||||
Sbjct 821 TTACGTACATT--ACATACACAATTTGTGTGTATGTTT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5