BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40270.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value Ahg493953 jgi|Araly1|493953|fgenesh2_kg.7__3386__AT5G40270.1 2586 0.0 > Ahg493953 jgi|Araly1|493953|fgenesh2_kg.7__3386__AT5G40270.1 Length=1758 Score = 2586 bits (1400), Expect = 0.0 Identities = 1650/1769 (93%), Gaps = 23/1769 (1%) Strand=Plus/Plus Query 12 tctctctctctctctctGCAGCTTTTAAAATCGCTTTCTCAATTCTCGTCGTTGTACCCA 71 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1 TCTCTCTCTCTCTCTCCGCAGCTCTTAAAATCGCTTTCTCAATTCTCGTCGTTGTA-CCA 59 Query 72 TTTCAGTTTCTCTCAACGTAACTGCTTCACGGCGGCGAGTGAGTGAGTTCGACGTGAAAT 131 |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 60 TTTCGGTTTCTCTCAACGTAACTGCATCACGGCGGCGAGTGACTGAGTTCGACGTGAAAT 119 Query 132 TTCAACTGATGGGAGCGTATTGCGACGAAAACCTAAGTAGTTTACCGGTGTTCTCCTCCG 191 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 120 TTCAACTGATGGGAGCGTATTGCAACGAAGACCTAAGTAGTTTACCGGTGTTCTCCGCCG 179 Query 192 GCGCTCCGGCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 251 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTGCTCCGTCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 239 Query 252 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAGAGGCTTCGTG 311 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 240 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAAAGGCTTCGTG 299 Query 312 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCAGGAGCTGTACATTCGAGATTTG 371 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 300 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCTGGAGCTGTACATTCTAGATTTG 359 Query 372 AGCACTCTCTAGGCGTGTATTGGCTTGCAGGCGAAACTGCTCAGAGGCTAAAAAATTTCC 431 |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 360 AGCACTCTTTAGGCGTGTATTGGCTTGCAGGCGAAACTGTTCAGAGGCTAAAAAGTTTCC 419 Query 432 AGGGAATGGAGCTTGGTATTGACAATTATGATCTTCAGACTGTGAGACTTGCTGGACTTC 491 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 420 AGGGAATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTC 479 Query 492 TCCATGATATTGGCCATGGGCCTTTCAGTCATATGTTTGAGCGTGAATTCCTTCCAAAGG 551 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 480 TCCATGACATTGGCCATGGGCCTTTCAGTCATATGTTCGAGCGTGAGTTCCTCCCAAAGG 539 Query 552 TCATAAGTGACTGTCAGT-GGTCTCATGAGTTAATGTCTGTAAACATGATTGACCATATG 610 ||||||||| ||||| || |||||||||||| ||||||||| ||||||||||||||||| Sbjct 540 TCATAAGTGGCTGTC-GTTGGTCTCATGAGTCAATGTCTGTTAACATGATTGACCATATA 598 Query 611 GTTGATACACATCACATCGATATTGATGCTCAAATGCTGAAAAGAGTGAAGGACATGATA 670 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 599 GTTGATACACATCACATCGATATTGATGCACAAATGCTGAAAAGAGTAAAGGACATGATA 658 Query 671 CTAGCTAGTACTGAATTTTCACAGCTGAAAGGCAATGCAGAGAAGCGTTTCTTGTATGAT 730 |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||| Sbjct 659 CTAGCTAGTACTGAATTTTCTCAGCTGAAAAGCAACGCAGAGAAACGTTTCTTGTATGAC 718 Query 731 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTACCTTGTCCGTGAT 790 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 719 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTATCTTGTCCGTGAT 778 Query 791 TCTCGAGCTTGTGGACTGGGATCCAATTTTCAATTCCAAAGACTGACAGAGACGATGAGA 850 |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| Sbjct 779 TCTCGAGCTTGTGGTCTGGGATGCAATTTTCAGTTCCAAAGACTGACAGAGACAATGAGA 838 Query 851 GTCCTGGACAATGAAATCTGCTTCCGCGCCAAGGAGTATCTTAGTGTCCACAAGTTATTT 910 ||| |||||||||||||||||| |||||| |||||||||| || |||||||||| ||||| Sbjct 839 GTCATGGACAATGAAATCTGCTACCGCGCTAAGGAGTATCGTAATGTCCACAAGCTATTT 898 Query 911 GCAACTCGAGCTGATCTTTATCGAACCGTCTACACGCATTCGAAAGTAAAGGCGATAGAG 970 || ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| Sbjct 899 GCGACTCGAGCTGATCTTTATCGAACTGTCTACACGCATCCAAAAGTAAAGGCGATAGAG 958 Query 971 CTGATGATAGTAGATGCCATGGTCAAAGCCAACAATCAT-TTGGAAATTTCTTCTATGAT 1029 || |||||||||||||||||||||||||| ||| || | |||| ||||||||| | || Sbjct 959 CTTATGATAGTAGATGCCATGGTCAAAGCTAACGATT-TCTTGGGGATTTCTTCTTTCAT 1017 Query 1030 TAATGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACTATCGAAATAGC 1089 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1018 TAGTGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACCATCGAAATAGC 1077 Query 1090 TCCAGATCCAGAACTTGCAGAAGCGAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1149 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1078 TCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1137 Query 1150 GTACCAATTCTGTAACGAATATGCGGTTCCAAAGGACAAAATCGATCATTTCAAAGCTGT 1209 |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| || Sbjct 1138 GTACCAATTCTGTAACGAGTATGCGGTTCCAAAGGAGAACATCGATCATTTCAAAGCCGT 1197 Query 1210 CACTCCTCAAGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGAAGA 1269 |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1198 CACTGCTCAGGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGATGA 1257 Query 1270 TATAGCTGTTACAAACGTCAAGATTGACTTGGCTCGTGGGAGAGAAAATCCGCTTGAATG 1329 ||| |||||||| |||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 1258 TATCGCTGTTACGAACGTCAAGATTGATTTAGCTCGTGGGAGAGAGAATCCTCTTGAATG 1317 Query 1330 CATCAACTTCTATAAGGATTATGATAGTGCAGAGAAGTTTG-TGATACCTGAGGACAGAG 1388 ||||||||||| | ||||||||||||||||||||||||||| | |||||||||||| ||| Sbjct 1318 CATCAACTTCTTTGAGGATTATGATAGTGCAGAGAAGTTTGGT-ATACCTGAGGACCGAG 1376 Query 1389 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTATATGCCAAAAAAC 1448 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1377 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTTTATGCCAAAAAAC 1436 Query 1449 CAGAATTGGTAGAAGCAGTTTCTGAGGCATTTGAAAACTTCCAAATGAGAACGTATGGAA 1508 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1437 CAGAATTGGTAGAAGCAGTTTCTGAGGCGTTTGAAAACTTCCAAATGAGAACGTATGGGG 1496 Query 1509 TCAAAGCTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAATTACACG 1568 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1497 TCAAAACTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAACTAC-CG 1555 Query 1569 TGGCCTT-AATTCATTTCATTTCAAACGGTTTTATTTTGGTTTTTAAG-GTCTTGAAACT 1626 ||||||| ||||||||||||||| |||||||||| ||||| |||| | ||||||||||| Sbjct 1556 TGGCCTTTAATTCATTTCATTTCTTACGGTTTTATATTGGTGTTTA-GCGTCTTGAAACT 1614 Query 1627 TTAGATATGGATGCGTGTACATA-TAGC-A-TGCCTTAGTCTTACGATATCGAAGCCTTG 1683 ||| ||| |||| |||| ||| | | | | | |||| |||||||||||||||||||| Sbjct 1615 TTAAATACGGATA--TGTATATAATCTCTACTTC-TTAGACTTACGATATCGAAGCCTTG 1671 Query 1684 GATTCAGAC-AGCGTGTTTATACGTAAGA-AAA-GGAAAAGCAAGGCACCATTT-CTTAA 1739 |||| | || ||| | || |||||||||| ||| |||||||||||||||||||| ||||| Sbjct 1672 GATTTAAACCAGCCT-TT-ATACGTAAGAGAAAAGGAAAAGCAAGGCACCATTTTCTTAA 1729 Query 1740 GATTTCGGATTTCGTACGGTTTTATCTTA 1768 ||||||||||||||||||||||||| ||| Sbjct 1730 GATTTCGGATTTCGTACGGTTTTATTTTA 1758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66924560465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5