BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40270.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493953 jgi|Araly1|493953|fgenesh2_kg.7__3386__AT5G40270.1 2586 0.0
> Ahg493953 jgi|Araly1|493953|fgenesh2_kg.7__3386__AT5G40270.1
Length=1758
Score = 2586 bits (1400), Expect = 0.0
Identities = 1650/1769 (93%), Gaps = 23/1769 (1%)
Strand=Plus/Plus
Query 12 tctctctctctctctctGCAGCTTTTAAAATCGCTTTCTCAATTCTCGTCGTTGTACCCA 71
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 TCTCTCTCTCTCTCTCCGCAGCTCTTAAAATCGCTTTCTCAATTCTCGTCGTTGTA-CCA 59
Query 72 TTTCAGTTTCTCTCAACGTAACTGCTTCACGGCGGCGAGTGAGTGAGTTCGACGTGAAAT 131
|||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 60 TTTCGGTTTCTCTCAACGTAACTGCATCACGGCGGCGAGTGACTGAGTTCGACGTGAAAT 119
Query 132 TTCAACTGATGGGAGCGTATTGCGACGAAAACCTAAGTAGTTTACCGGTGTTCTCCTCCG 191
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 120 TTCAACTGATGGGAGCGTATTGCAACGAAGACCTAAGTAGTTTACCGGTGTTCTCCGCCG 179
Query 192 GCGCTCCGGCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 251
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGCTCCGTCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 239
Query 252 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAGAGGCTTCGTG 311
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAAAGGCTTCGTG 299
Query 312 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCAGGAGCTGTACATTCGAGATTTG 371
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 300 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCTGGAGCTGTACATTCTAGATTTG 359
Query 372 AGCACTCTCTAGGCGTGTATTGGCTTGCAGGCGAAACTGCTCAGAGGCTAAAAAATTTCC 431
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 360 AGCACTCTTTAGGCGTGTATTGGCTTGCAGGCGAAACTGTTCAGAGGCTAAAAAGTTTCC 419
Query 432 AGGGAATGGAGCTTGGTATTGACAATTATGATCTTCAGACTGTGAGACTTGCTGGACTTC 491
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 AGGGAATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTC 479
Query 492 TCCATGATATTGGCCATGGGCCTTTCAGTCATATGTTTGAGCGTGAATTCCTTCCAAAGG 551
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 480 TCCATGACATTGGCCATGGGCCTTTCAGTCATATGTTCGAGCGTGAGTTCCTCCCAAAGG 539
Query 552 TCATAAGTGACTGTCAGT-GGTCTCATGAGTTAATGTCTGTAAACATGATTGACCATATG 610
||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||
Sbjct 540 TCATAAGTGGCTGTC-GTTGGTCTCATGAGTCAATGTCTGTTAACATGATTGACCATATA 598
Query 611 GTTGATACACATCACATCGATATTGATGCTCAAATGCTGAAAAGAGTGAAGGACATGATA 670
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 599 GTTGATACACATCACATCGATATTGATGCACAAATGCTGAAAAGAGTAAAGGACATGATA 658
Query 671 CTAGCTAGTACTGAATTTTCACAGCTGAAAGGCAATGCAGAGAAGCGTTTCTTGTATGAT 730
|||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||
Sbjct 659 CTAGCTAGTACTGAATTTTCTCAGCTGAAAAGCAACGCAGAGAAACGTTTCTTGTATGAC 718
Query 731 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTACCTTGTCCGTGAT 790
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTATCTTGTCCGTGAT 778
Query 791 TCTCGAGCTTGTGGACTGGGATCCAATTTTCAATTCCAAAGACTGACAGAGACGATGAGA 850
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 779 TCTCGAGCTTGTGGTCTGGGATGCAATTTTCAGTTCCAAAGACTGACAGAGACAATGAGA 838
Query 851 GTCCTGGACAATGAAATCTGCTTCCGCGCCAAGGAGTATCTTAGTGTCCACAAGTTATTT 910
||| |||||||||||||||||| |||||| |||||||||| || |||||||||| |||||
Sbjct 839 GTCATGGACAATGAAATCTGCTACCGCGCTAAGGAGTATCGTAATGTCCACAAGCTATTT 898
Query 911 GCAACTCGAGCTGATCTTTATCGAACCGTCTACACGCATTCGAAAGTAAAGGCGATAGAG 970
|| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 899 GCGACTCGAGCTGATCTTTATCGAACTGTCTACACGCATCCAAAAGTAAAGGCGATAGAG 958
Query 971 CTGATGATAGTAGATGCCATGGTCAAAGCCAACAATCAT-TTGGAAATTTCTTCTATGAT 1029
|| |||||||||||||||||||||||||| ||| || | |||| ||||||||| | ||
Sbjct 959 CTTATGATAGTAGATGCCATGGTCAAAGCTAACGATT-TCTTGGGGATTTCTTCTTTCAT 1017
Query 1030 TAATGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACTATCGAAATAGC 1089
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 TAGTGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACCATCGAAATAGC 1077
Query 1090 TCCAGATCCAGAACTTGCAGAAGCGAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1149
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1078 TCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1137
Query 1150 GTACCAATTCTGTAACGAATATGCGGTTCCAAAGGACAAAATCGATCATTTCAAAGCTGT 1209
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1138 GTACCAATTCTGTAACGAGTATGCGGTTCCAAAGGAGAACATCGATCATTTCAAAGCCGT 1197
Query 1210 CACTCCTCAAGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGAAGA 1269
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 CACTGCTCAGGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGATGA 1257
Query 1270 TATAGCTGTTACAAACGTCAAGATTGACTTGGCTCGTGGGAGAGAAAATCCGCTTGAATG 1329
||| |||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1258 TATCGCTGTTACGAACGTCAAGATTGATTTAGCTCGTGGGAGAGAGAATCCTCTTGAATG 1317
Query 1330 CATCAACTTCTATAAGGATTATGATAGTGCAGAGAAGTTTG-TGATACCTGAGGACAGAG 1388
||||||||||| | ||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1318 CATCAACTTCTTTGAGGATTATGATAGTGCAGAGAAGTTTGGT-ATACCTGAGGACCGAG 1376
Query 1389 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTATATGCCAAAAAAC 1448
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1377 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTTTATGCCAAAAAAC 1436
Query 1449 CAGAATTGGTAGAAGCAGTTTCTGAGGCATTTGAAAACTTCCAAATGAGAACGTATGGAA 1508
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 CAGAATTGGTAGAAGCAGTTTCTGAGGCGTTTGAAAACTTCCAAATGAGAACGTATGGGG 1496
Query 1509 TCAAAGCTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAATTACACG 1568
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1497 TCAAAACTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAACTAC-CG 1555
Query 1569 TGGCCTT-AATTCATTTCATTTCAAACGGTTTTATTTTGGTTTTTAAG-GTCTTGAAACT 1626
||||||| ||||||||||||||| |||||||||| ||||| |||| | |||||||||||
Sbjct 1556 TGGCCTTTAATTCATTTCATTTCTTACGGTTTTATATTGGTGTTTA-GCGTCTTGAAACT 1614
Query 1627 TTAGATATGGATGCGTGTACATA-TAGC-A-TGCCTTAGTCTTACGATATCGAAGCCTTG 1683
||| ||| |||| |||| ||| | | | | | |||| ||||||||||||||||||||
Sbjct 1615 TTAAATACGGATA--TGTATATAATCTCTACTTC-TTAGACTTACGATATCGAAGCCTTG 1671
Query 1684 GATTCAGAC-AGCGTGTTTATACGTAAGA-AAA-GGAAAAGCAAGGCACCATTT-CTTAA 1739
|||| | || ||| | || |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 1672 GATTTAAACCAGCCT-TT-ATACGTAAGAGAAAAGGAAAAGCAAGGCACCATTTTCTTAA 1729
Query 1740 GATTTCGGATTTCGTACGGTTTTATCTTA 1768
||||||||||||||||||||||||| |||
Sbjct 1730 GATTTCGGATTTCGTACGGTTTTATTTTA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5